Lus10034072.g (Linum usitatissimum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Lus10034072.g T344900_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.834 0.326
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.826 0.348
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10034072 TCP 148 285

Links

Other TCP family TFs
Other Linum usitatissimum TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.957
Cla016709 Citrullus lanatus Cla016709 I 0.865
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.861
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.860
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.857
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.856
mgf019480m Mimulus guttatus mgf019480m I 0.854
mgf022233m Mimulus guttatus mgf022233m I 0.854
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.850
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.845
30167.m000856 Ricinus communis 30167.m000856 I 0.844
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.844
TCM_019518 Theobroma cacao TCM_019518 I 0.841
Bo6g103670 Brassica oleracea Bo6g103670 I 0.839
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.839
BRC2 Arabidopsis thaliana AT1G68800 I 0.838
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.838
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.837
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I 0.836
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.836
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.836
Bo6g099040 Brassica oleracea Bo6g099040 I 0.835
Bra004212 Brassica rapa Bra004212 I 0.835
MDP0000173048 Malus domestica MDP0000173048 I 0.835
Bra034010 Brassica rapa Bra034010 I 0.834
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.834
29738.m001041 Ricinus communis 29738.m001041 I 0.834
PK12240.1 Cannabis sativa PK12240.1 D 0.834
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.833
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.832
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.831
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.830
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.830
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.830
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.830
TCM_011874 Theobroma cacao TCM_011874 I 0.829
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.829
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.828
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.828
TCP1 Arabidopsis thaliana AT1G67260 D 0.826
Bra004097 Brassica rapa Bra004097 I 0.826
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.826
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.826
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.825
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.825
Bo2g055640 Brassica oleracea Bo2g055640 I 0.824
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.823
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.823
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.822
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.822