MDP0000202241 (Malus domestica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 MDP0000202241 T344921_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.925 0.794
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.921 0.762
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.921 0.762
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.920 0.762
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.920 0.762
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.883 0.746
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.877 0.746
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.874 0.635
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.826 0.587
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.826 0.587
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000202241 TCP 160 222

Links

Other TCP family TFs
Other Malus domestica TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000130524 Malus domestica MDP0000130524 I 0.980
MDP0000199422 Malus domestica MDP0000199422 I 0.980
MDP0000373350 Malus domestica MDP0000373350 I 0.980
MDP0000253526 Malus domestica MDP0000253526 I 0.977
MDP0000617746 Malus domestica MDP0000617746 I 0.977
MDP0000388684 Malus domestica MDP0000388684 I 0.972
TCP17 Arabidopsis lyrata fgenesh2_kg.6__773__AT5G08070.1 I 0.944
Si002496m.g Setaria italica Si002496m.g I 0.942
MDP0000594000 Malus domestica MDP0000594000 I 0.937
Pavir.Ea02793 Panicum virgatum Pavir.Ea02793 I 0.934
OBART05G22490 Oryza barthii OBART05G22490 I 0.933
Cla010936 Citrullus lanatus Cla010936 I 0.933
F775_18470 Aegilops tauschii F775_18470 I 0.931
Solyc03g115010.1 Solanum lycopersicum Solyc03g115010.1 I 0.928
Aquca_002_00878 Aquilegia coerulea Aquca_002_00878 I 0.928
BRADI2G50687 Brachypodium distachyon BRADI2G50687 I 0.927
GSMUA_Achr4G32850_001 Musa acuminata GSMUA_Achr4G32850_001 I 0.926
SELMODRAFT_7330 Selaginella moellendorffii SELMODRAFT_7330 I 0.926
GLYMA19G03786 Glycine max GLYMA19G03786 I 0.925
Sb03g035350 Sorghum bicolor Sb03g035350 I 0.925
PK10344.1 Cannabis sativa PK10344.1 D 0.925
Bra001032 Brassica rapa Bra001032 I 0.924
Bo3g055460 Brassica oleracea Bo3g055460 I 0.922
BRADI2G20060 Brachypodium distachyon BRADI2G20060 I 0.922
SELMODRAFT_28794 Selaginella moellendorffii SELMODRAFT_28794 I 0.922
MDP0000320363 Malus domestica MDP0000320363 I 0.922
TCP13 Arabidopsis thaliana AT3G02150 D 0.921
PTF1 Arabidopsis lyrata fgenesh2_kg.3__146__AT3G02150.2 I 0.921
Carubv10014042m.g Capsella rubella Carubv10014042m.g I 0.921
Gorai.008G199700 Gossypium raimondii Gorai.008G199700 I 0.921
TCP17 Arabidopsis thaliana AT5G08070 D 0.920
Cagra.1365s0013 Capsella grandiflora Cagra.1365s0013 I 0.920
MLOC_14785 Hordeum vulgare MLOC_14785 I 0.919
29905.m000443 Ricinus communis 29905.m000443 I 0.918
Carubv10001730m.g Capsella rubella Carubv10001730m.g I 0.918
Gorai.006G009800 Gossypium raimondii Gorai.006G009800 I 0.918
Pavir.J15913 Panicum virgatum Pavir.J15913 I 0.918
Lus10032984.g Linum usitatissimum Lus10032984.g I 0.917
LPERR01G27380 Leersia perrieri LPERR01G27380 I 0.915
PDK_20s1781021g002 Phoenix dactylifera PDK_20s1781021g002 I 0.915
OGLUM01G36040 Oryza glumaepatula OGLUM01G36040 I 0.913
TRAES3BF002700090CFD_g Triticum aestivum TRAES3BF002700090CFD_g I 0.913
Ca_24948 Cicer arietinum Ca_24948 I 0.912
Si022833m.g Setaria italica Si022833m.g I 0.911
Bostr.13129s0160 Boechera stricta Bostr.13129s0160 I 0.910
GSMUA_Achr6G27420_001 Musa acuminata GSMUA_Achr6G27420_001 I 0.908
mgf006703m Mimulus guttatus mgf006703m I 0.908
MDP0000534647 Malus domestica MDP0000534647 I 0.908
MLOC_70266 Hordeum vulgare MLOC_70266 I 0.907
OPUNC01G30950 Oryza punctata OPUNC01G30950 I 0.907
Solyc02g089020.1 Solanum lycopersicum Solyc02g089020.1 I 0.907
AMTR_s00154p00072430 Amborella trichopoda AMTR_s00154p00072430 I 0.906
GRMZM2G035944 Zea mays GRMZM2G035944 I 0.906
GRMZM2G120151 Zea mays GRMZM2G120151 I 0.906
Bo3g004670 Brassica oleracea Bo3g004670 I 0.903
Bra005967 Brassica rapa Bra005967 I 0.903
GLYMA06G22240 Glycine max GLYMA06G22240 I 0.903
POPTR_0004s11510 Populus trichocarpa POPTR_0004s11510 I 0.903
POPTR_0017s13050 Populus trichocarpa POPTR_0017s13050 I 0.903
TCM_018809 Theobroma cacao TCM_018809 I 0.903
cassava29094.valid.m1 Manihot esculenta cassava29094.valid.m1 I 0.903
cassava30483.valid.m1 Manihot esculenta cassava30483.valid.m1 I 0.903
Cucsa.215290 Cucumis sativus Cucsa.215290 I 0.903
evm.TU.supercontig_14.188 Carica papaya evm.TU.supercontig_14.188 I 0.903
SapurV1A.0323s0010 Salix purpurea SapurV1A.0323s0010 I 0.903
SapurV1A.0795s0080 Salix purpurea SapurV1A.0795s0080 I 0.903
SapurV1A.0901s0090 Salix purpurea SapurV1A.0901s0090 I 0.903
SapurV1A.4442s0010 Salix purpurea SapurV1A.4442s0010 I 0.903
SapurV1A.4443s0010 Salix purpurea SapurV1A.4443s0010 I 0.903
Thhalv10014467m.g Eutrema salsugineum Thhalv10014467m.g I 0.902
TCM_014288 Theobroma cacao TCM_014288 I 0.901
PK17676.1 Cannabis sativa PK17676.1 I 0.901
LjSGA_022391.1 Lotus japonicus LjSGA_022391.1 I 0.901
SELMODRAFT_104521 Selaginella moellendorffii SELMODRAFT_104521 I 0.900
SELMODRAFT_89227 Selaginella moellendorffii SELMODRAFT_89227 I 0.900
mgf008626m Mimulus guttatus mgf008626m I 0.900
Pavir.Ca01337 Panicum virgatum Pavir.Ca01337 I 0.899
PGSC0003DMG400024632 Solanum tuberosum PGSC0003DMG400024632 I 0.897
PRUPE_ppa007243mg Prunus persica PRUPE_ppa007243mg I 0.897
Pm016049 Prunus mume Pm016049 I 0.897
Gorai.001G076700 Gossypium raimondii Gorai.001G076700 I 0.897
GLYMA17G08761 Glycine max GLYMA17G08761 I 0.896
PGSC0003DMG400001362 Solanum tuberosum PGSC0003DMG400001362 I 0.896
Bo5g152840 Brassica oleracea Bo5g152840 I 0.895
GLYMA08G27155 Glycine max GLYMA08G27155 I 0.895
GRMZM2G166946 Zea mays GRMZM2G166946 I 0.895
mgf007729m Mimulus guttatus mgf007729m I 0.895
Cagra.3823s0015 Capsella grandiflora Cagra.3823s0015 I 0.895
gene04255-v1.0-hybrid Fragaria vesca gene04255-v1.0-hybrid I 0.895
Pavir.J35609 Panicum virgatum Pavir.J35609 I 0.895
Gorai.012G048500 Gossypium raimondii Gorai.012G048500 I 0.894
OMERI05G20240 Oryza meridionalis OMERI05G20240 I 0.893
OPUNC05G20130 Oryza punctata OPUNC05G20130 I 0.893
Ciclev10020626m.g Citrus clementina Ciclev10020626m.g I 0.893
evm.TU.supercontig_94.62 Carica papaya evm.TU.supercontig_94.62 I 0.893
MDP0000692406 Malus domestica MDP0000692406 I 0.893
orange1.1g017725m.g Citrus sinensis orange1.1g017725m.g I 0.893
Bra039158 Brassica rapa Bra039158 I 0.892
30138.m003959 Ricinus communis 30138.m003959 I 0.891
PTF1 Vitis vinifera VIT_14s0068g00330 I 0.890
Bostr.1460s0130 Boechera stricta Bostr.1460s0130 I 0.890
GLYMA18G50371 Glycine max GLYMA18G50371 I 0.889
Eucgr.I02038 Eucalyptus grandis Eucgr.I02038 I 0.889
Thhalv10021021m.g Eutrema salsugineum Thhalv10021021m.g I 0.889
GLYMA04G32324 Glycine max GLYMA04G32324 I 0.888
Ciclev10011887m.g Citrus clementina Ciclev10011887m.g I 0.888
orange1.1g015799m.g Citrus sinensis orange1.1g015799m.g I 0.888
MTR_4g109660 Medicago truncatula MTR_4g109660 I 0.887
POPTR_0015s06980 Populus trichocarpa POPTR_0015s06980 I 0.887
Bo7g098260 Brassica oleracea Bo7g098260 I 0.886
Bra012990 Brassica rapa Bra012990 I 0.886
gene26101-v1.0-hybrid Fragaria vesca gene26101-v1.0-hybrid I 0.884
TCP5 Arabidopsis lyrata fgenesh2_kg.8__2066__AT5G60970.1 D 0.883
Ca_13216 Cicer arietinum Ca_13216 I 0.883
SapurV1A.0546s0080 Salix purpurea SapurV1A.0546s0080 I 0.880
SapurV1A.2245s0020 Salix purpurea SapurV1A.2245s0020 I 0.880
PDK_20s1781021g001 Phoenix dactylifera PDK_20s1781021g001 I 0.880
Cucsa.113300 Cucumis sativus Cucsa.113300 I 0.879
Cagra.0083s0006 Capsella grandiflora Cagra.0083s0006 I 0.878
Carubv10026656m.g Capsella rubella Carubv10026656m.g I 0.878
TCP5 Arabidopsis thaliana AT5G60970 D 0.877
BGIOSGA000770 Oryza indica BGIOSGA000770 I 0.877
OBART01G31910 Oryza barthii OBART01G31910 I 0.877
OMERI01G28950 Oryza meridionalis OMERI01G28950 I 0.877
ONIVA01G36230 Oryza nivara ONIVA01G36230 I 0.877
ORGLA01G0259400 Oryza glaberrima ORGLA01G0259400 I 0.877
ORUFI01G35100 Oryza rufipogon ORUFI01G35100 I 0.877
OS01G0763200 Oryza sativa OS01G0763200 I 0.877
Bostr.26833s0140 Boechera stricta Bostr.26833s0140 I 0.877
MDP0000155433 Malus domestica MDP0000155433 I 0.877
Thhalv10004440m.g Eutrema salsugineum Thhalv10004440m.g I 0.877
chr4.CM0500.330.nd Lotus japonicus chr4.CM0500.330.nd I 0.874
LjT20A21.20.nc Lotus japonicus LjT20A21.20.nc D 0.874
LPERR05G18480 Leersia perrieri LPERR05G18480 I 0.873
MTR_3g026050 Medicago truncatula MTR_3g026050 I 0.873
Ca_24196 Cicer arietinum Ca_24196 I 0.873
Cla019340 Citrullus lanatus Cla019340 I 0.873
Cucsa.198300 Cucumis sativus Cucsa.198300 I 0.873
Eucgr.B00608 Eucalyptus grandis Eucgr.B00608 I 0.873
Lus10034679.g Linum usitatissimum Lus10034679.g I 0.873
Solyc06g069460.1 Solanum lycopersicum Solyc06g069460.1 I 0.871
PRUPE_ppa014630mg Prunus persica PRUPE_ppa014630mg I 0.870
Pm024946 Prunus mume Pm024946 I 0.870
MDP0000120671 Malus domestica MDP0000120671 I 0.870
OMERI01G07200 Oryza meridionalis OMERI01G07200 I 0.869
Bostr.24513s0122 Boechera stricta Bostr.24513s0122 I 0.869
Sb09g025340 Sorghum bicolor Sb09g025340 I 0.867
GSMUA_Achr10G01020_001 Musa acuminata GSMUA_Achr10G01020_001 I 0.866
cassava32529.m1 Manihot esculenta cassava32529.m1 I 0.866
Bo2g161240 Brassica oleracea Bo2g161240 I 0.865
Bra029344 Brassica rapa Bra029344 I 0.865
PGSC0003DMG400004082 Solanum tuberosum PGSC0003DMG400004082 I 0.865
Traes_1AL_79B8C6F15 Triticum aestivum Traes_1AL_79B8C6F15 I 0.865
ORUFI05G23910 Oryza rufipogon ORUFI05G23910 I 0.863
BGIOSGA020173 Oryza indica BGIOSGA020173 I 0.861
OBART02G32460 Oryza barthii OBART02G32460 I 0.861
OGLUM05G23780 Oryza glumaepatula OGLUM05G23780 I 0.861
ONIVA05G23460 Oryza nivara ONIVA05G23460 I 0.861
ORGLA05G0197200 Oryza glaberrima ORGLA05G0197200 I 0.861
OS05G0513100 Oryza sativa OS05G0513100 I 0.861
Solyc08g048370.2 Solanum lycopersicum Solyc08g048370.2 I 0.861
mgf021685m Mimulus guttatus mgf021685m I 0.860
mgf024988m Mimulus guttatus mgf024988m I 0.860
e_gw1.207.98.1 Physcomitrella patens e_gw1.207.98.1 I 0.859
MDP0000247249 Malus domestica MDP0000247249 I 0.859
BRADI2G06890 Brachypodium distachyon BRADI2G06890 I 0.858
GLYMA13G34690 Glycine max GLYMA13G34690 I 0.858
Bra021586 Brassica rapa Bra021586 I 0.856
MTR_6g015350 Medicago truncatula MTR_6g015350 I 0.856
TCP10 Arabidopsis lyrata scaffold_401627.1 I 0.856
Aquca_057_00119 Aquilegia coerulea Aquca_057_00119 I 0.856
Cagra.2935s0020 Capsella grandiflora Cagra.2935s0020 I 0.856
Carubv10005003m.g Capsella rubella Carubv10005003m.g I 0.856
GLYMA05G00300 Glycine max GLYMA05G00300 I 0.855
Solyc02g065800.1 Solanum lycopersicum Solyc02g065800.1 I 0.853
SELMODRAFT_29162 Selaginella moellendorffii SELMODRAFT_29162 I 0.851
Si004564m.g Setaria italica Si004564m.g I 0.851
MDP0000693146 Malus domestica MDP0000693146 I 0.851
BGIOSGA009051 Oryza indica BGIOSGA009051 N 0.850
PGSC0003DMG400019904 Solanum tuberosum PGSC0003DMG400019904 I 0.850
Sb08g021690 Sorghum bicolor Sb08g021690 I 0.850
AMTR_s00092p00113360 Amborella trichopoda AMTR_s00092p00113360 I 0.849
TCP10 Arabidopsis thaliana AT2G31070 I 0.849
GLYMA12G35720 Glycine max GLYMA12G35720 I 0.849
Cla018836 Citrullus lanatus Cla018836 I 0.849
SELMODRAFT_29160 Selaginella moellendorffii SELMODRAFT_29160 I 0.848
cassava46272.m1 Manihot esculenta cassava46272.m1 I 0.848
AMTR_s00029p00245970 Amborella trichopoda AMTR_s00029p00245970 I 0.847
GRMZM2G015037 Zea mays GRMZM2G015037 I 0.846
Solyc05g012840.1 Solanum lycopersicum Solyc05g012840.1 I 0.846
Bo3g147760 Brassica oleracea Bo3g147760 I 0.845
Bra010789 Brassica rapa Bra010789 I 0.845
ONIVA06G04550 Oryza nivara ONIVA06G04550 N 0.842
Solyc08g048390.1 Solanum lycopersicum Solyc08g048390.1 I 0.841
Cla023702 Citrullus lanatus Cla023702 I 0.841
PGSC0003DMG400022964 Solanum tuberosum PGSC0003DMG400022964 I 0.839
PGSC0003DMG400026568 Solanum tuberosum PGSC0003DMG400026568 I 0.839
MDP0000149841 Malus domestica MDP0000149841 I 0.839
VIT_10s0003g00870 Vitis vinifera VIT_10s0003g00870 I 0.838
MDP0000249507 Malus domestica MDP0000249507 I 0.838
OMERI07G02020 Oryza meridionalis OMERI07G02020 I 0.837
GLYMA08G10350 Glycine max GLYMA08G10350 I 0.836
Si004293m.g Setaria italica Si004293m.g I 0.836
Cucsa.122730 Cucumis sativus Cucsa.122730 I 0.836
Bo1g019520 Brassica oleracea Bo1g019520 I 0.835
cassava7638.valid.m1 Manihot esculenta cassava7638.valid.m1 I 0.835
Gorai.011G046000 Gossypium raimondii Gorai.011G046000 I 0.835
MDP0000623166 Malus domestica MDP0000623166 N 0.834
AMTR_s00133p00053750 Amborella trichopoda AMTR_s00133p00053750 I 0.833
Bo1g129830 Brassica oleracea Bo1g129830 I 0.833
OLONG_000443 Oryza longistaminata OLONG_000443 N 0.832
Gorai.009G153900 Gossypium raimondii Gorai.009G153900 I 0.832
Cucsa.047860 Cucumis sativus Cucsa.047860 I 0.830
AC205574.3_FG006 Zea mays AC205574.3_FG006 I 0.828
TCP2 Vitis vinifera VIT_10s0003g03910 I 0.827
TCP2 Arabidopsis thaliana AT4G18390 D 0.826
TCP2 Arabidopsis lyrata fgenesh2_kg.7__2455__AT4G18390.1 D 0.826
Cla019865 Citrullus lanatus Cla019865 I 0.826
29693.m001968 Ricinus communis 29693.m001968 I 0.826
cassava2420.valid.m1 Manihot esculenta cassava2420.valid.m1 I 0.826
Cucsa.111880 Cucumis sativus Cucsa.111880 I 0.826
mgf017929m Mimulus guttatus mgf017929m I 0.826
Bostr.30275s0311 Boechera stricta Bostr.30275s0311 I 0.826
Carubv10011113m.g Capsella rubella Carubv10011113m.g I 0.826
evm.TU.supercontig_17.1 Carica papaya evm.TU.supercontig_17.1 I 0.826
Pavir.J37910 Panicum virgatum Pavir.J37910 I 0.826
Thhalv10025465m.g Eutrema salsugineum Thhalv10025465m.g I 0.826
AMTR_s00357p00009370 Amborella trichopoda AMTR_s00357p00009370 I 0.824
Lus10000463.g Linum usitatissimum Lus10000463.g I 0.824
F775_07590 Aegilops tauschii F775_07590 I 0.823
Cagra.3678s0010 Capsella grandiflora Cagra.3678s0010 I 0.823
Ciclev10014986m.g Citrus clementina Ciclev10014986m.g I 0.823
gene30370-v1.0-hybrid Fragaria vesca gene30370-v1.0-hybrid I 0.823
orange1.1g009938m.g Citrus sinensis orange1.1g009938m.g I 0.823
Solyc02g077250.2 Solanum lycopersicum Solyc02g077250.2 I 0.822