MDP0000249507 (Malus domestica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 MDP0000249507 T344930_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.861 0.531
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.851 0.547
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.851 0.547
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.849 0.562
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.849 0.562
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.849 0.562
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.849 0.562
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.845 0.562
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.827 0.562
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000249507 TCP 1 73

Links

Other TCP family TFs
Other Malus domestica TFs

203 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SELMODRAFT_7330 Selaginella moellendorffii SELMODRAFT_7330 I 0.922
SELMODRAFT_104521 Selaginella moellendorffii SELMODRAFT_104521 I 0.917
SELMODRAFT_89227 Selaginella moellendorffii SELMODRAFT_89227 I 0.917
MDP0000149841 Malus domestica MDP0000149841 I 0.911
AMTR_s00029p00245970 Amborella trichopoda AMTR_s00029p00245970 I 0.910
GSMUA_Achr10G01020_001 Musa acuminata GSMUA_Achr10G01020_001 I 0.909
SELMODRAFT_28794 Selaginella moellendorffii SELMODRAFT_28794 I 0.909
e_gw1.207.98.1 Physcomitrella patens e_gw1.207.98.1 I 0.908
GLYMA13G34690 Glycine max GLYMA13G34690 I 0.904
GLYMA12G35720 Glycine max GLYMA12G35720 I 0.898
AMTR_s00133p00053750 Amborella trichopoda AMTR_s00133p00053750 I 0.895
MDP0000693146 Malus domestica MDP0000693146 I 0.894
GSMUA_Achr8G19990_001 Musa acuminata GSMUA_Achr8G19990_001 I 0.892
Solyc07g053410.2 Solanum lycopersicum Solyc07g053410.2 I 0.890
OMERI01G07200 Oryza meridionalis OMERI01G07200 I 0.887
SELMODRAFT_29162 Selaginella moellendorffii SELMODRAFT_29162 I 0.885
Bra021586 Brassica rapa Bra021586 I 0.884
mgf021685m Mimulus guttatus mgf021685m I 0.883
SELMODRAFT_29160 Selaginella moellendorffii SELMODRAFT_29160 I 0.882
AMTR_s00007p00041830 Amborella trichopoda AMTR_s00007p00041830 I 0.881
Bo1g129830 Brassica oleracea Bo1g129830 I 0.881
VIT_10s0003g00870 Vitis vinifera VIT_10s0003g00870 I 0.881
Cla023702 Citrullus lanatus Cla023702 I 0.881
Lus10000463.g Linum usitatissimum Lus10000463.g I 0.880
GRMZM2G015037 Zea mays GRMZM2G015037 I 0.879
TCP10 Arabidopsis thaliana AT2G31070 I 0.878
BRADI2G06890 Brachypodium distachyon BRADI2G06890 I 0.878
Cucsa.122730 Cucumis sativus Cucsa.122730 I 0.878
Bostr.24513s0122 Boechera stricta Bostr.24513s0122 I 0.878
Si004564m.g Setaria italica Si004564m.g I 0.875
GSMUA_Achr6G14430_001 Musa acuminata GSMUA_Achr6G14430_001 I 0.874
TCP10 Arabidopsis lyrata scaffold_401627.1 I 0.874
MDP0000623166 Malus domestica MDP0000623166 N 0.871
GLYMA06G34330 Glycine max GLYMA06G34330 I 0.870
PGSC0003DMG400015377 Solanum tuberosum PGSC0003DMG400015377 I 0.870
Pavir.Ea02793 Panicum virgatum Pavir.Ea02793 I 0.869
Ciclev10015871m.g Citrus clementina Ciclev10015871m.g I 0.868
orange1.1g019898m.g Citrus sinensis orange1.1g019898m.g I 0.868
AMTR_s00021p00158020 Amborella trichopoda AMTR_s00021p00158020 I 0.866
AMTR_s00119p00135380 Amborella trichopoda AMTR_s00119p00135380 I 0.864
GLYMA13G36840 Glycine max GLYMA13G36840 I 0.864
Solyc12g014140.1 Solanum lycopersicum Solyc12g014140.1 I 0.864
MDP0000243495 Malus domestica MDP0000243495 I 0.864
GLYMA12G20160 Glycine max GLYMA12G20160 I 0.861
PRUPE_ppa004661mg Prunus persica PRUPE_ppa004661mg I 0.861
Pm011369 Prunus mume Pm011369 I 0.861
mgf002386m Mimulus guttatus mgf002386m I 0.861
gene27171-v1.0-hybrid Fragaria vesca gene27171-v1.0-hybrid I 0.861
MDP0000184743 Malus domestica MDP0000184743 I 0.861
LjT20A21.20.nc Lotus japonicus LjT20A21.20.nc D 0.861
TCM_031706 Theobroma cacao TCM_031706 I 0.859
Aquca_057_00119 Aquilegia coerulea Aquca_057_00119 I 0.858
BRADI2G20060 Brachypodium distachyon BRADI2G20060 I 0.857
Gorai.002G064500 Gossypium raimondii Gorai.002G064500 I 0.857
F775_07590 Aegilops tauschii F775_07590 I 0.856
GSMUA_Achr10G14340_001 Musa acuminata GSMUA_Achr10G14340_001 I 0.856
GSMUA_Achr5G06660_001 Musa acuminata GSMUA_Achr5G06660_001 I 0.856
PGSC0003DMG400009406 Solanum tuberosum PGSC0003DMG400009406 I 0.856
Ca_12866 Cicer arietinum Ca_12866 I 0.856
Bo5g127500 Brassica oleracea Bo5g127500 I 0.855
PGSC0003DMG400012396 Solanum tuberosum PGSC0003DMG400012396 I 0.853
Solyc07g062680.1 Solanum lycopersicum Solyc07g062680.1 I 0.853
cassava19177.valid.m1 Manihot esculenta cassava19177.valid.m1 I 0.853
Gorai.013G172800 Gossypium raimondii Gorai.013G172800 I 0.853
MLOC_68285 Hordeum vulgare MLOC_68285 I 0.852
TRAES3BF014900010CFD_g Triticum aestivum TRAES3BF014900010CFD_g I 0.852
MDP0000130524 Malus domestica MDP0000130524 I 0.852
MDP0000199422 Malus domestica MDP0000199422 I 0.852
MDP0000253526 Malus domestica MDP0000253526 I 0.852
MDP0000373350 Malus domestica MDP0000373350 I 0.852
MDP0000617746 Malus domestica MDP0000617746 I 0.852
PK12847.1 Cannabis sativa PK12847.1 I 0.852
AC205574.3_FG006 Zea mays AC205574.3_FG006 I 0.851
TCP2 Arabidopsis thaliana AT4G18390 D 0.851
TCP2 Arabidopsis lyrata fgenesh2_kg.7__2455__AT4G18390.1 D 0.851
MLOC_12004 Hordeum vulgare MLOC_12004 I 0.851
OS01G0755500 Oryza sativa OS01G0755500 I 0.851
Sb03g035350 Sorghum bicolor Sb03g035350 I 0.851
Bostr.30275s0311 Boechera stricta Bostr.30275s0311 I 0.851
Eucgr.K01089 Eucalyptus grandis Eucgr.K01089 I 0.851
Thhalv10025465m.g Eutrema salsugineum Thhalv10025465m.g I 0.851
LPERR03G30870 Leersia perrieri LPERR03G30870 I 0.850
POPTR_0011s09890 Populus trichocarpa POPTR_0011s09890 I 0.850
TCP3 Arabidopsis thaliana AT1G53230 D 0.849
MTR_8g463380 Medicago truncatula MTR_8g463380 I 0.849
TCP4 Arabidopsis lyrata scaffold_301743.1 D 0.849
Solyc05g012840.1 Solanum lycopersicum Solyc05g012840.1 I 0.849
Ca_16227 Cicer arietinum Ca_16227 I 0.849
Cla016530 Citrullus lanatus Cla016530 I 0.849
Aquca_005_00099 Aquilegia coerulea Aquca_005_00099 I 0.849
Carubv10023502m.g Capsella rubella Carubv10023502m.g I 0.849
Ciclev10008390m.g Citrus clementina Ciclev10008390m.g I 0.849
Eucgr.F01204 Eucalyptus grandis Eucgr.F01204 I 0.849
orange1.1g014360m.g Citrus sinensis orange1.1g014360m.g I 0.849
Si002496m.g Setaria italica Si002496m.g I 0.848
VIT_19s0014g01680 Vitis vinifera VIT_19s0014g01680 I 0.848
Bo1g019520 Brassica oleracea Bo1g019520 I 0.847
cassava35669.valid.m1 Manihot esculenta cassava35669.valid.m1 I 0.847
mgf024988m Mimulus guttatus mgf024988m I 0.847
Cagra.2527s0006 Capsella grandiflora Cagra.2527s0006 I 0.847
Gorai.009G373000 Gossypium raimondii Gorai.009G373000 I 0.847
MDP0000388684 Malus domestica MDP0000388684 I 0.847
XM_002300382.1 Populus trichocarpa POPTR_0001s38480 I 0.846
Sb03g001940 Sorghum bicolor Sb03g001940 I 0.846
TCP4 Arabidopsis thaliana AT3G15030 D 0.845
GSMUA_Achr3G03540_001 Musa acuminata GSMUA_Achr3G03540_001 I 0.845
Cla002460 Citrullus lanatus Cla002460 I 0.845
30192.m000545 Ricinus communis 30192.m000545 I 0.845
Cucsa.273460 Cucumis sativus Cucsa.273460 I 0.845
evm.TU.supercontig_131.71 Carica papaya evm.TU.supercontig_131.71 I 0.845
SapurV1A.0083s0520 Salix purpurea SapurV1A.0083s0520 I 0.845
PK04257.1 Cannabis sativa PK04257.1 I 0.845
Si022833m.g Setaria italica Si022833m.g I 0.844
OBART05G22490 Oryza barthii OBART05G22490 I 0.843
OMERI07G02020 Oryza meridionalis OMERI07G02020 I 0.843
Traes_2AL_EA60A06AC Triticum aestivum Traes_2AL_EA60A06AC I 0.843
Traes_2BL_36A3AB3A2 Triticum aestivum Traes_2BL_36A3AB3A2 I 0.843
Bo4g053680 Brassica oleracea Bo4g053680 I 0.842
Bra018280 Brassica rapa Bra018280 I 0.842
BRADI2G50190 Brachypodium distachyon BRADI2G50190 I 0.842
GSMUA_Achr7G25320_001 Musa acuminata GSMUA_Achr7G25320_001 I 0.842
POPTR_0013s12370 Populus trichocarpa POPTR_0013s12370 I 0.842
Bostr.0124s0115 Boechera stricta Bostr.0124s0115 I 0.842
Pavir.J24681 Panicum virgatum Pavir.J24681 I 0.842
Bra030952 Brassica rapa Bra030952 I 0.841
GRMZM2G020805 Zea mays GRMZM2G020805 I 0.841
MTR_2g090960 Medicago truncatula MTR_2g090960 I 0.841
Cagra.0007s0045 Capsella grandiflora Cagra.0007s0045 I 0.841
Pavir.J03475 Panicum virgatum Pavir.J03475 I 0.841
AMTR_s00357p00009370 Amborella trichopoda AMTR_s00357p00009370 I 0.840
Solyc05g032780.1 Solanum lycopersicum Solyc05g032780.1 I 0.840
Cla013734 Citrullus lanatus Cla013734 I 0.840
Pavir.J15913 Panicum virgatum Pavir.J15913 I 0.840
Thhalv10011534m.g Eutrema salsugineum Thhalv10011534m.g I 0.839
Bo3g066540 Brassica oleracea Bo3g066540 I 0.838
Bra027284 Brassica rapa Bra027284 I 0.838
TCP3 Arabidopsis lyrata fgenesh2_kg.1__4401__AT1G53230.1 I 0.838
Bostr.28625s0206 Boechera stricta Bostr.28625s0206 I 0.838
Cagra.1472s0007 Capsella grandiflora Cagra.1472s0007 I 0.838
Carubv10009348m.g Capsella rubella Carubv10009348m.g I 0.838
Carubv10013851m.g Capsella rubella Carubv10013851m.g I 0.838
MDP0000202241 Malus domestica MDP0000202241 I 0.838
Thhalv10020786m.g Eutrema salsugineum Thhalv10020786m.g I 0.838
POPTR_0019s12110 Populus trichocarpa POPTR_0019s12110 I 0.837
PRUPE_ppa007094mg Prunus persica PRUPE_ppa007094mg I 0.837
TCP10 Vitis vinifera VIT_12s0028g02520 I 0.837
Ca_02473 Cicer arietinum Ca_02473 I 0.837
Pm029788 Prunus mume Pm029788 I 0.837
29646.m001101 Ricinus communis 29646.m001101 I 0.837
gene17805-v1.0-hybrid Fragaria vesca gene17805-v1.0-hybrid I 0.837
MDP0000442611 Malus domestica MDP0000442611 I 0.837
SapurV1A.1073s0050 Salix purpurea SapurV1A.1073s0050 I 0.837
SapurV1A.2882s0020 Salix purpurea SapurV1A.2882s0020 I 0.837
SapurV1A.5793s0010 Salix purpurea SapurV1A.5793s0010 I 0.837
GSMUA_Achr2G12990_001 Musa acuminata GSMUA_Achr2G12990_001 I 0.836
Bo7g105960 Brassica oleracea Bo7g105960 I 0.835
Bra012600 Brassica rapa Bra012600 I 0.835
MLOC_10214 Hordeum vulgare MLOC_10214 I 0.835
Pavir.Ba03864 Panicum virgatum Pavir.Ba03864 I 0.835
GSMUA_Achr7G13980_001 Musa acuminata GSMUA_Achr7G13980_001 I 0.833
SapurV1A.0303s0040 Salix purpurea SapurV1A.0303s0040 I 0.833
AMTR_s00092p00113360 Amborella trichopoda AMTR_s00092p00113360 I 0.832
BRADI1G06460 Brachypodium distachyon BRADI1G06460 I 0.832
F775_18470 Aegilops tauschii F775_18470 I 0.832
GRMZM2G035944 Zea mays GRMZM2G035944 I 0.831
GRMZM2G120151 Zea mays GRMZM2G120151 I 0.831
OGLUM01G36040 Oryza glumaepatula OGLUM01G36040 I 0.831
ORGLA03G0335700 Oryza glaberrima ORGLA03G0335700 I 0.831
TRAES3BF002700090CFD_g Triticum aestivum TRAES3BF002700090CFD_g I 0.831
OBART02G32460 Oryza barthii OBART02G32460 I 0.830
ONIVA01G09270 Oryza nivara ONIVA01G09270 I 0.830
TCM_003652 Theobroma cacao TCM_003652 I 0.830
cassava35945.valid.m1 Manihot esculenta cassava35945.valid.m1 I 0.829
MDP0000916623 Malus domestica MDP0000916623 I 0.829
MDP0000927314 Malus domestica MDP0000927314 I 0.829
BRADI1G58450 Brachypodium distachyon BRADI1G58450 I 0.828
GLYMA12G14200 Glycine max GLYMA12G14200 I 0.828
Sb08g021690 Sorghum bicolor Sb08g021690 I 0.828
evm.TU.supercontig_209.13 Carica papaya evm.TU.supercontig_209.13 I 0.828
PCF5 Oryza indica BGIOSGA002128 I 0.827
GSMUA_Achr7G01160_001 Musa acuminata GSMUA_Achr7G01160_001 I 0.827
LPERR01G06830 Leersia perrieri LPERR01G06830 I 0.827
OBART01G07230 Oryza barthii OBART01G07230 I 0.827
OGLUM01G08160 Oryza glumaepatula OGLUM01G08160 I 0.827
OLONG_003082 Oryza longistaminata OLONG_003082 I 0.827
OPUNC01G06940 Oryza punctata OPUNC01G06940 I 0.827
ORGLA01G0062300 Oryza glaberrima ORGLA01G0062300 I 0.827
ORUFI01G07780 Oryza rufipogon ORUFI01G07780 I 0.827
OS01G0213800 Oryza sativa OS01G0213800 D 0.827
Solyc02g077250.2 Solanum lycopersicum Solyc02g077250.2 I 0.827
Cagra.2935s0020 Capsella grandiflora Cagra.2935s0020 I 0.827
Carubv10005003m.g Capsella rubella Carubv10005003m.g I 0.827
GSMUA_Achr3G31370_001 Musa acuminata GSMUA_Achr3G31370_001 I 0.825
Solyc08g048390.1 Solanum lycopersicum Solyc08g048390.1 I 0.825
29646.m001100 Ricinus communis 29646.m001100 I 0.825
Thhalv10016870m.g Eutrema salsugineum Thhalv10016870m.g I 0.825
chr3.CM0160.1110.nc Lotus japonicus chr3.CM0160.1110.nc I 0.825
LPERR07G02820 Leersia perrieri LPERR07G02820 I 0.824
Sb02g003070 Sorghum bicolor Sb02g003070 I 0.824
Sb03g034918 Sorghum bicolor Sb03g034918 I 0.824
GLYMA08G10350 Glycine max GLYMA08G10350 I 0.823
MDP0000247249 Malus domestica MDP0000247249 I 0.823
GSMUA_Achr4G32850_001 Musa acuminata GSMUA_Achr4G32850_001 I 0.822