Pavir.Bb02154 (Panicum virgatum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Pavir.Bb02154 T344991_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TB1
M01312_2.00 		Oryza sativa
GGSCCCCCYM
KRGGGGGSCC		 PBM
Lambert et al.(2019)
pTH8740 		0.829 0.522
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.825 0.467
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb02154.1.p TCP 100 218

Links

Other TCP family TFs
Other Panicum virgatum TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si033183m.g Setaria italica Si033183m.g I 0.970
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.970
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.962
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.958
OBART09G10040 Oryza barthii OBART09G10040 I 0.958
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.958
OS09G0410500 Oryza sativa OS09G0410500 I 0.958
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.957
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.957
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.957
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.955
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.953
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.953
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.947
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.947
Si015230m.g Setaria italica Si015230m.g I 0.946
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.944
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.944
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.944
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.942
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.942
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.941
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.940
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.939
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.938
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I 0.936
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.935
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.932
OMERI08G12900 Oryza meridionalis OMERI08G12900 I 0.929
OGLUM08G16380 Oryza glumaepatula OGLUM08G16380 I 0.928
ONIVA08G16720 Oryza nivara ONIVA08G16720 I 0.928
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I 0.928
F775_01923 Aegilops tauschii F775_01923 I 0.925
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.925
BGIOSGA028717 Oryza indica BGIOSGA028717 I 0.923
ORUFI08G17540 Oryza rufipogon ORUFI08G17540 I 0.923
OS08G0432300 Oryza sativa OS08G0432300 I 0.923
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.917
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.916
OBART08G15630 Oryza barthii OBART08G15630 N 0.913
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.911
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.863
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.859
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.858
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.856
30174.m008721 Ricinus communis 30174.m008721 I 0.854
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.854
MDP0000224810 Malus domestica MDP0000224810 N 0.854
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.849
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.848
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.848
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.847
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.845
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.845
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.843
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.842
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.842
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.842
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.842
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.842
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.840
Cla016709 Citrullus lanatus Cla016709 I 0.840
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.838
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.838
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.838
Pm030202 Prunus mume Pm030202 I 0.838
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I 0.837
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.837
mgf022233m Mimulus guttatus mgf022233m I 0.837
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.836
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.836
GRMZM2G458087 Zea mays GRMZM2G458087 N 0.835
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.835
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I 0.835
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.835
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.834
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.834
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.833
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.833
Pm015499 Prunus mume Pm015499 I 0.833
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.833
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.833
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.833
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.832
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.832
GRMZM2G414114 Zea mays GRMZM2G414114 N 0.831
TCM_019518 Theobroma cacao TCM_019518 I 0.831
Lus10032465.g Linum usitatissimum Lus10032465.g N 0.831
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.830
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.830
LPERR03G25950 Leersia perrieri LPERR03G25950 I 0.830
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.830
Pavir.Ia00838 Panicum virgatum Pavir.Ia00838 I 0.830
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.829
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.829
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.829
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.829
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.829
TB1 Oryza sativa OS03G0706500 D 0.829
Bo2g055640 Brassica oleracea Bo2g055640 I 0.828
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.828
OBART03G31290 Oryza barthii OBART03G31290 I 0.828
OMERI03G27910 Oryza meridionalis OMERI03G27910 I 0.828
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I 0.828
Si038692m.g Setaria italica Si038692m.g I 0.828
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.828
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.827
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.827
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.827
PK12240.1 Cannabis sativa PK12240.1 D 0.825
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.824
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.824
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.824
Traes_2BS_03909B330 Triticum aestivum Traes_2BS_03909B330 N 0.823
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.823
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.822