Thhalv10019499m.g (Eutrema salsugineum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Thhalv10019499m.g T345092_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.925 0.444
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.882 0.405
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.868 0.373
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019499m TCP 85 237

Links

Other TCP family TFs
Other Eutrema salsugineum TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra034010 Brassica rapa Bra034010 I 0.949
Bo2g055640 Brassica oleracea Bo2g055640 I 0.944
Bo6g099040 Brassica oleracea Bo6g099040 I 0.944
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.943
Bra004212 Brassica rapa Bra004212 I 0.942
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.932
Bo6g103670 Brassica oleracea Bo6g103670 I 0.930
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.930
TCP1 Arabidopsis thaliana AT1G67260 D 0.925
Bra004097 Brassica rapa Bra004097 I 0.916
Cla016709 Citrullus lanatus Cla016709 I 0.912
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.911
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.910
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.907
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.906
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.904
TCM_019518 Theobroma cacao TCM_019518 I 0.902
Pm015499 Prunus mume Pm015499 I 0.902
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.898
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.897
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.897
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.891
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.890
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.889
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.887
Cla007227 Citrullus lanatus Cla007227 I 0.885
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.884
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.883
mgf022233m Mimulus guttatus mgf022233m I 0.882
PK12240.1 Cannabis sativa PK12240.1 D 0.882
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.878
mgf019480m Mimulus guttatus mgf019480m I 0.878
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.878
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.874
29738.m001041 Ricinus communis 29738.m001041 I 0.874
30167.m000856 Ricinus communis 30167.m000856 I 0.873
30174.m008721 Ricinus communis 30174.m008721 I 0.873
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.873
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.872
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.872
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.871
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.869
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.868
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.868
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.868
PK19717.1 Cannabis sativa PK19717.1 D 0.868
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.867
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.864
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.862
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.862
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.861
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.860
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.860
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.860
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.860
MDP0000173048 Malus domestica MDP0000173048 I 0.859
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.858
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.857
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.856
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.854
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.854
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.853
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.853
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.853
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.852
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.851
TCM_011874 Theobroma cacao TCM_011874 I 0.849
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.849
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.849
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.849
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.848
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.848
Pm029002 Prunus mume Pm029002 I 0.848
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.848
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.846
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.846
BRC2 Arabidopsis thaliana AT1G68800 I 0.844
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.844
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.842
Cla002355 Citrullus lanatus Cla002355 I 0.842
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.842
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.842
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.841
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.841
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.841
mgf026636m Mimulus guttatus mgf026636m I 0.841
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.841
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.839
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.838
MDP0000272980 Malus domestica MDP0000272980 I 0.838
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.837
Pm030202 Prunus mume Pm030202 I 0.837
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.837
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.835
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.835
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.835
LPERR03G25950 Leersia perrieri LPERR03G25950 I 0.834
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.834
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.832
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.832
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.831
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.830
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.830
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.830
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.830
Bo2g061250 Brassica oleracea Bo2g061250 I 0.829
Bra038350 Brassica rapa Bra038350 I 0.829
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.829
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.829
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.829
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.828
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I 0.828
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.828
Si033183m.g Setaria italica Si033183m.g I 0.828
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.828
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.827
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.827
OBART09G10040 Oryza barthii OBART09G10040 I 0.827
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.827
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.827
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.827
OS09G0410500 Oryza sativa OS09G0410500 I 0.827
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.827
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.827
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.827
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.826
Si015230m.g Setaria italica Si015230m.g I 0.826
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.826
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.826
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.825
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.825
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.824
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.823
Pavir.Ia00838 Panicum virgatum Pavir.Ia00838 I 0.823