CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10021948m.g
(
Eutrema salsugineum
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
Thhalv10021948m.g
T345095_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10021948m
TCP
154
313
PSRKDRHSKIKTAKGTRDRRMRLSLEVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIAKSLSNHGGFSSGEESQTQPALGSMDTSSDLCELASMWTVDDRGSNTNTTETQGNKRSMRGKRKMSQPRTTILKKLSKDSRAKARERAKERTKEKMMKR
Links
Other
TCP
family TFs
Other
Eutrema salsugineum
TFs
67 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra001710
Brassica rapa
Bra001710
I
0.975
BRC1
Arabidopsis thaliana
AT3G18550
I
0.973
Bo3g071560
Brassica oleracea
Bo3g071560
I
0.971
Cagra.1681s0023
Capsella grandiflora
Cagra.1681s0023
I
0.970
Carubv10013748m.g
Capsella rubella
Carubv10013748m.g
I
0.970
Bo5g117410
Brassica oleracea
Bo5g117410
N
0.968
Bra037579
Brassica rapa
Bra037579
I
0.968
BRC1
Arabidopsis lyrata
scaffold_302193.1
N
0.968
Bo1g117490
Brassica oleracea
Bo1g117490
I
0.967
Bostr.19424s0807
Boechera stricta
Bostr.19424s0807
I
0.965
evm.TU.supercontig_13.48
Carica papaya
evm.TU.supercontig_13.48
N
0.890
TCM_012252
Theobroma cacao
TCM_012252
I
0.885
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.883
Cucsa.113660
Cucumis sativus
Cucsa.113660
N
0.879
Cucsa.198860
Cucumis sativus
Cucsa.198860
N
0.868
MTR_4g111935
Medicago truncatula
MTR_4g111935
I
0.867
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.866
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.864
Cla019282
Citrullus lanatus
Cla019282
N
0.862
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.860
chr4.LjB15O07.110.nc
Lotus japonicus
chr4.LjB15O07.110.nc
I
0.859
GLYMA05G07943
Glycine max
GLYMA05G07943
I
0.857
GLYMA06G23410
Glycine max
GLYMA06G23410
N
0.852
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.852
Si015230m.g
Setaria italica
Si015230m.g
I
0.852
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.849
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.849
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.849
F775_01923
Aegilops tauschii
F775_01923
I
0.847
30174.m008721
Ricinus communis
30174.m008721
I
0.844
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.844
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.842
BRADI3G36590
Brachypodium distachyon
BRADI3G36590
N
0.841
GRMZM2G055024
Zea mays
GRMZM2G055024
I
0.839
MDP0000224810
Malus domestica
MDP0000224810
N
0.839
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.838
OBART09G10040
Oryza barthii
OBART09G10040
I
0.838
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.838
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.838
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.838
OS09G0410500
Oryza sativa
OS09G0410500
I
0.838
Eucgr.K02654
Eucalyptus grandis
Eucgr.K02654
I
0.838
SapurV1A.0301s0010
Salix purpurea
SapurV1A.0301s0010
I
0.838
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.837
Cla018797
Citrullus lanatus
Cla018797
N
0.837
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.835
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.834
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
0.834
SapurV1A.1895s0010
Salix purpurea
SapurV1A.1895s0010
I
0.834
SapurV1A.1895s0020
Salix purpurea
SapurV1A.1895s0020
I
0.834
LjSGA_018294.2
Lotus japonicus
LjSGA_018294.2
I
0.834
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
0.833
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.833
Traes_5BL_19F383CC71
Triticum aestivum
Traes_5BL_19F383CC71
I
0.833
LPERR08G12880
Leersia perrieri
LPERR08G12880
I
0.832
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
0.832
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
0.832
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.830
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.829
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.828
Sb07g021140
Sorghum bicolor
Sb07g021140
I
0.828
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.827
Si038692m.g
Setaria italica
Si038692m.g
I
0.826
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.825
Pavir.Ia00838
Panicum virgatum
Pavir.Ia00838
I
0.825
TRIUR3_20728
Triticum urartu
TRIUR3_20728
I
0.824
MDP0000219838
Malus domestica
MDP0000219838
N
0.822