chr2.LjB17A04.40.nc (Lotus japonicus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 chr2.LjB17A04.40.nc T345116_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.886 0.409
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.873 0.468
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.870 0.403
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.LjB17A04.40.nc TCP 104 261

Links

Other TCP family TFs
Other Lotus japonicus TFs

88 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.958
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.956
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.950
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.944
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.944
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.943
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.943
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.940
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.931
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.924
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.917
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.916
30167.m000856 Ricinus communis 30167.m000856 I 0.910
29738.m001041 Ricinus communis 29738.m001041 I 0.905
Cla007227 Citrullus lanatus Cla007227 I 0.904
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.904
Cla016709 Citrullus lanatus Cla016709 I 0.903
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.903
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.902
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.900
MDP0000173048 Malus domestica MDP0000173048 I 0.900
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.898
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.898
Bra004212 Brassica rapa Bra004212 I 0.896
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.895
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.895
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.894
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.893
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.893
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.893
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.893
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.891
TCM_019518 Theobroma cacao TCM_019518 I 0.891
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.891
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.891
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.890
Pm029002 Prunus mume Pm029002 I 0.890
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.888
Cla002355 Citrullus lanatus Cla002355 I 0.888
MDP0000272980 Malus domestica MDP0000272980 I 0.887
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.886
PK12240.1 Cannabis sativa PK12240.1 D 0.886
BRC2 Arabidopsis thaliana AT1G68800 I 0.884
Bra004097 Brassica rapa Bra004097 I 0.883
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.883
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.881
Bo6g103670 Brassica oleracea Bo6g103670 I 0.880
TCM_011874 Theobroma cacao TCM_011874 I 0.880
Bo2g061250 Brassica oleracea Bo2g061250 I 0.879
Bra038350 Brassica rapa Bra038350 I 0.879
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.878
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.877
Bo6g099040 Brassica oleracea Bo6g099040 I 0.876
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.876
Pm015499 Prunus mume Pm015499 I 0.876
Bra034010 Brassica rapa Bra034010 I 0.874
PK19717.1 Cannabis sativa PK19717.1 D 0.873
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.872
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.872
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.872
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.872
TCP1 Arabidopsis thaliana AT1G67260 D 0.870
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.870
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.868
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.868
mgf019480m Mimulus guttatus mgf019480m I 0.867
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.865
Bo2g055640 Brassica oleracea Bo2g055640 I 0.864
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.858
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.857
mgf026636m Mimulus guttatus mgf026636m I 0.857
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.855
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.854
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.849
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.848
mgf022233m Mimulus guttatus mgf022233m I 0.846
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.845
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.838
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.831
Pm030202 Prunus mume Pm030202 I 0.831
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.831
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.831
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.831
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.829
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.827
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.824
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.823
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.823