CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bo7g095740 *(Brassica oleracea)* TCR/CxC
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03638 (TCR)	IPR005172	Bo7g095740	T345219_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AT5G25790 M01319_2.00	Arabidopsis thaliana	NHYRAAHN	NDTTYRDN	PBM Lambert et al.(2019) pTH11533	0.672	0.920
AT2G20110 M02520_2.00	Arabidopsis thaliana	DTTTAAAH	DTTTAAAH	PBM Weirauch et al.(2014) pTH7914	0.672	0.840
TCX5 M02523_2.00	Arabidopsis thaliana	NRTTCAAAYN	NRTTTGAAYN	PBM Weirauch et al.(2014) pTH8164	0.672	0.840
AT2G20110 M07295_2.00	Arabidopsis thaliana	WWHWAADATTYAAAW	WTTTRAATHTTWDWW	Dap-seq OMalley et al.(2016) AT2G20110_col_a	0.672	0.840
AT2G20110 M07296_2.00	Arabidopsis thaliana	WWHNAAATTYAAAHN	NDTTTRAATTTNDWW	Dap-seq OMalley et al.(2016) AT2G20110_colamp_a	0.672	0.840
fgeneshCV_pg.C_scaffold_18000164 M02534_2.00	Chlorella vulgaris	NNNNDYRAAH	DTTYRHNNNN	PBM Weirauch et al.(2014) pTH9252	0.672	0.800
lin54 M02526_2.00	Danio rerio	NHTYRAAH	DTTYRADN	PBM Weirauch et al.(2014) pTH8399	0.672	0.707
LIN54 M02527_2.00	Gallus gallus	NRTTYAAAH	DTTTRAAYN	PBM Weirauch et al.(2014) pTH8566	0.672	0.680
TCX3 M01087_2.00	Arabidopsis thaliana	NNDTTYAAAH	DTTTRAAHNN	PBM Sullivan et al.(2014) pTH7218	0.672	0.667
TCX3 M02522_2.00	Arabidopsis thaliana	WTTYAAAH	DTTTRAAW	PBM Weirauch et al.(2014) pTH7421	0.672	0.667
NEMVEDRAFT_v1g111410 M01320_2.00	Nematostella vectensis	NNNNYRWRN	NYWYRNNNN	PBM Lambert et al.(2019) pTH9771	0.672	0.667
SPU_025306 M02531_2.00	Strongylocentrotus purpuratus	NNNNWYRAAH	DTTYRWNNNN	PBM Weirauch et al.(2014) pTH9286	0.672	0.667
fgenesh1_pg.C_Chr_09.0001000301 M02533_2.00	Ostreococcus tauri	NNNNNRHNN	NNDYNNNNN	PBM Weirauch et al.(2014) pTH9457	0.672	0.667
TCX3 M07297_2.00	Arabidopsis thaliana	DWTTYRAAWTTBAAW	WTTVAAATTYRAAWH	Dap-seq OMalley et al.(2016) SOL1_colamp_a	0.672	0.667
TCX3 M07298_2.00	Arabidopsis thaliana	WTWWAAAATTYAAAW	WTTTRAATTTTWWAW	Dap-seq OMalley et al.(2016) SOL1_col	0.672	0.667
ENSTSYG00000005291 M02528_2.00	Tarsius syrichta	NNWDHDHWNN	NNWDHDHWNN	PBM Weirauch et al.(2014) pTH9366	0.672	0.653
TCX2 M07300_2.00	Arabidopsis thaliana	WWTYVAAATTYRAAW	WTTYRAATTTBRAWW	Dap-seq OMalley et al.(2016) TCX2_col_a	0.672	0.653
TCX2 M07301_2.00	Arabidopsis thaliana	TTYVAAATTYRAAW	WTTYRAATTTBRAA	Dap-seq OMalley et al.(2016) TCX2_colamp_a	0.672	0.653
BRADI1G55710 M02525_2.00	Brachypodium distachyon	NVTBYRVABN	NVTBYRVABN	PBM Weirauch et al.(2014) pTH9241	0.672	0.640
XP_002124866.1 M01321_2.00	Ciona intestinalis	NDTTYRAAN	NTTYRAAHN	PBM Lambert et al.(2019) pTH9835	0.672	0.640
PK22848.1 M02532_2.00	Cannabis sativa	NNNYNAAATTTNN	NNAAATTTNRNNN	PBM Weirauch et al.(2014) pTH9724	0.672	0.627
gw1.20.00.89.1 M02535_2.00	Ostreococcus tauri	WNYWBVWRNW	WNYWBVWRNW	PBM Weirauch et al.(2014) pTH9647	0.672	0.627
TSO1 M07299_2.00	Arabidopsis thaliana	WWWTWDAAATTYAAA	TTTRAATTTHWAWWW	Dap-seq OMalley et al.(2016) TSO1_col_a	0.672	0.627
BGIBMGA008956 M02524_2.00	Bombyx mori	AATTTAAAW	WTTTAAATT	PBM Weirauch et al.(2014) pTH9238	0.672	0.613
GE12548 M02529_2.00	Drosophila yakuba	DTTYAAAY	RTTTRAAH	PBM Weirauch et al.(2014) pTH9262	0.672	0.600
TCX4 M02521_2.00	Arabidopsis thaliana	DWTTYRAAWH	DWTTYRAAWH	PBM Weirauch et al.(2014) pTH7573	0.672	0.573
GSPATT00010696001 M02530_2.00	Paramecium tetraurelia	NNBRAAHN	NDTTYVNN	PBM Weirauch et al.(2014) pTH8720	0.672	0.560
PK27683.1 M01322_2.00	Cannabis sativa	NDTTYAAAH	DTTTRAAHN	PBM Lambert et al.(2019) pTH11347	0.672	0.507
For this family, TFs with SR scores > 0.660* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bo7g095740.1	TCR/CxC	161	197	QKHCNCKASRCLKLYCECFASGSYCNGCNCVNCQNNL
Bo7g095740.1	TCR/CxC	246	283	SKGCHCKKSGCLKKYCECYQANVLCSENCRCQDCKNFE

Links
Other TCR/CxC family TFs
Other *Brassica oleracea* TFs

1213 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACRE_005140	Acremonium chrysogenum	ACRE_005140	N
BBA_03157	Beauveria bassiana	BBA_03157	N
CCM_04766	Cordyceps militaris	CCM_04766	N
CFIO01_07240	Colletotrichum fioriniae	CFIO01_07240	N
CGGC5_3579	Colletotrichum gloeosporioides	CGGC5_3579	N
Cob_04134	Colletotrichum orbiculare	Cob_04134	N
CPUR_08379	Claviceps purpurea	CPUR_08379	N
CSUB01_01838	Colletotrichum sublineola	CSUB01_01838	N
FFUJ_00827	Fusarium fujikuroi	FFUJ_00827	N
FGRRES_00324	Fusarium graminearum	FGRRES_00324	N
FOXG_00743	Fusarium oxysporum	FOXG_00743	N
FPSE_07686	Fusarium pseudograminearum	FPSE_07686	N
FVEG_00773	Fusarium verticillioides	FVEG_00773	N
GLRG_05068	Colletotrichum graminicola	GLRG_05068	N
MAC_06554	Metarhizium acridum	MAC_06554	N
MAJ_07304	Metarhizium majus	MAJ_07304	N
MAM_00993	Metarhizium album	MAM_00993	N
MANI_111205	Metarhizium anisopliae	MANI_111205	N
MBR_05147	Metarhizium brunneum	MBR_05147	N
MGG_14558	Magnaporthe oryzae	MGG_14558	N
MGU_01525	Metarhizium guizhouense	MGU_01525	N
NechaG98872	Fusarium solani	NechaG98872	N
S40285_03382	Stachybotrys chlorohalonata	S40285_03382	N
S40288_05284	Stachybotrys chartarum	S40288_05284	N
SAPIO_CDS6673	Scedosporium apiospermum	SAPIO_CDS6673	N
UV8b_750	Ustilaginoidea virens	UV8b_750	N
VHEMI03828	Torrubiella hemipterigena	VHEMI03828	N
X797_006949	Metarhizium robertsii	X797_006949	N

Bo7g095740 (Brassica oleracea) TCR/CxC

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1213 Related TFs

Bo7g095740 **(Brassica oleracea)
TCR/CxC**