Ciclev10007795m.g (Citrus clementina)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03638 (TCR) IPR005172 Ciclev10007795m.g T346043_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.933
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.933
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.933
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.933
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.853
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.840
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.680
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.680
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.680
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.667
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.653
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.653
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.640
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.640
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.640
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.640
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.640
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.627
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.627
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.613
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.613
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.613
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.600
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.600
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.587
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.587
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.547
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.533
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10007795m TCR/CxC 112 148
Ciclev10007795m TCR/CxC 197 234

Links

Other TCR/CxC family TFs
Other Citrus clementina TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_078430 Acremonium chrysogenum ACRE_078430 I
AB10510.1 Alternaria brassicicola AB10510.1 I
AOL_s00054g426 Arthrobotrys oligospora AOL_s00054g426 I
ARB_04330 Arthroderma benhamiae ARB_04330 I
MCYG_05206 Arthroderma otae MCYG_05206 I
ACLA_049440 Aspergillus clavatus CADACLAG00004607 I
CADAFLAG00002000 Aspergillus flavus CADAFLAG00002000 I
AFUA_4G10220 Aspergillus fumigatus CADAFUAG00008139 I
ANIA_02009 Aspergillus nidulans CADANIAG00008677 I
CADANGAG00004383 Aspergillus niger CADANGAG00004383 I
CADAORAG00001740 Aspergillus oryzae CADAORAG00001740 I
EURHEDRAFT_33024 Aspergillus ruber EURHEDRAFT_33024 I
ATEG_00707 Aspergillus terreus CADATEAG00006049 I
M437DRAFT_17573 Aureobasidium melanogenum M437DRAFT_17573 I
M438DRAFT_337107 Aureobasidium pullulans M438DRAFT_337107 I
AUEXF2481DRAFT_4723 Aureobasidium subglaciale AUEXF2481DRAFT_4723 I
BAUCODRAFT_46155 Baudoinia compniacensis BAUCODRAFT_46155 I
BBA_09764 Beauveria bassiana BBA_09764 I
COCC4DRAFT_145536 Bipolaris maydis COCC4DRAFT_145536 I
COCMIDRAFT_97398 Bipolaris oryzae COCMIDRAFT_97398 I
COCSADRAFT_316172 Bipolaris sorokiniana COCSADRAFT_316172 I
COCVIDRAFT_35595 Bipolaris victoriae COCVIDRAFT_35595 I
COCCADRAFT_98536 Bipolaris zeicola COCCADRAFT_98536 I
BDDG_01924 Blastomyces dermatitidis BDDG_01924 I
BOTBODRAFT_273374 Botryobasidium botryosum BOTBODRAFT_273374 I
Bcin08g06620 Botrytis cinerea Bcin08g06620 I
PVAR5_4295 Byssochlamys spectabilis PVAR5_4295 I
A1O1_09257 Capronia coronata A1O1_09257 I
A1O3_04716 Capronia epimyces A1O3_04716 I
PV04_09430 Capronia semiimmersa PV04_09430 I
CHGG_07578 Chaetomium globosum CHGG_07578 I
CTHT_0069620 Chaetomium thermophilum CTHT_0069620 I
Z519_08645 Cladophialophora bantiana Z519_08645 I
G647_07996 Cladophialophora carrionii G647_07996 I
PV07_00358 Cladophialophora immunda PV07_00358 I
A1O5_11654 Cladophialophora psammophila A1O5_11654 I
A1O7_09038 Cladophialophora yegresii A1O7_09038 I
CPUR_02900 Claviceps purpurea CPUR_02900 I
CIMG_09071 Coccidioides immitis CIMG_09071 I
CPC735_015080 Coccidioides posadasii CPC735_015080 I
estExt_Genewise1.C_230428 Cochliobolus heterostrophus C5 estExt_Genewise1.C_230428 I
CFIO01_08636 Colletotrichum fioriniae CFIO01_08636 I
CGGC5_8911 Colletotrichum gloeosporioides CGGC5_8911 I
GLRG_04843 Colletotrichum graminicola GLRG_04843 I
CH063_09099 Colletotrichum higginsianum CH063_09099 I
Cob_09008 Colletotrichum orbiculare Cob_09008 I
CSUB01_05911 Colletotrichum sublineola CSUB01_05911 I
W97_08853 Coniosporium apollinis W97_08853 I
CC1G_12380 Coprinopsis cinerea CC1G_12380 I
CCM_01917 Cordyceps militaris CCM_01917 I
estExt_fgenesh1_pm.C_11052 Cryphonectria parasitica estExt_fgenesh1_pm.C_11052 I
HMPREF1541_09773 Cyphellophora europaea HMPREF1541_09773 I
H072_3561 Dactylellina haptotyla H072_3561 I
hbx10 Dictyostelium discoideum DDB_G0284293 D
GID1.0049906 Dictyostelium purpureum GID1.0049906 I
DOTSEDRAFT_69441 Dothistroma septosporum DOTSEDRAFT_69441 I
DRE_02305 Drechslerella stenobrocha DRE_02305 I
EPUS_00532 Endocarpon pusillum EPUS_00532 I
EV44_g5529 Erysiphe necator EV44_g5529 I
UCREL1_10957 Eutypa lata UCREL1_10957 I
A1O9_10475 Exophiala aquamarina A1O9_10475 I
HMPREF1120_01387 Exophiala dermatitidis HMPREF1120_01387 I
PV10_04527 Exophiala mesophila PV10_04527 I
PV06_08621 Exophiala oligosperma PV06_08621 I
PV11_03368 Exophiala sideris PV11_03368 I
PV08_02081 Exophiala spinifera PV08_02081 I
PV05_00128 Exophiala xenobiotica PV05_00128 I
FIBRA_06885 Fibroporia radiculosa FIBRA_06885 I
FOMPIDRAFT_1135811 Fomitopsis pinicola FOMPIDRAFT_1135811 I
Z517_01632 Fonsecaea pedrosoi Z517_01632 I
FFUJ_08943 Fusarium fujikuroi FFUJ_08943 I
FGRRES_09019 Fusarium graminearum FGRRES_09019 I
FPSE_07078 Fusarium pseudograminearum FPSE_07078 I
NechaG46180 Fusarium solani NechaG46180 I
GGTG_14272 Gaeumannomyces graminis GGTG_14272 I
GALMADRAFT_67940 Galerina marginata GALMADRAFT_67940 I
M7I_3672 Glarea lozoyensis M7I_3672 I
GLOTRDRAFT_62830 Gloeophyllum trabeum GLOTRDRAFT_62830 I
CMQ_7465 Grosmannia clavigera CMQ_7465 I
HETIRDRAFT_316855 Heterobasidion irregulare HETIRDRAFT_316855 I
HCBG_07805 Histoplasma capsulatum HCBG_07805 I
JAAARDRAFT_435587 Jaapia argillacea JAAARDRAFT_435587 I
K443DRAFT_118259 Laccaria amethystina K443DRAFT_118259 I
LACBIDRAFT_297319 Laccaria bicolor LACBIDRAFT_297319 I
LEMA_P109350.1 Leptosphaeria maculans LEMA_P109350.1 I
MPH_05440 Macrophomina phaseolina MPH_05440 I
MGG_04853 Magnaporthe oryzae MGG_04853 I
MAPG_09605 Magnaporthe poae MAPG_09605 I
MBM_01133 Marssonina brunnea MBM_01133 I
MAC_07310 Metarhizium acridum MAC_07310 I
MAM_07140 Metarhizium album MAM_07140 I
MANI_005260 Metarhizium anisopliae MANI_005260 I
MBR_09861 Metarhizium brunneum MBR_09861 I
MGU_07058 Metarhizium guizhouense MGU_07058 I
MAJ_09430 Metarhizium majus MAJ_09430 I
X797_009738 Metarhizium robertsii X797_009738 I
MCYG_05206 Microsporum canis MCYG_05206 I
MGYG_06249 Microsporum gypseum MGYG_06249 I
MYCTH_2301643 Myceliophthora thermophila MYCTH_2301643 I
estExt_Genewise1Plus.C_20760 Mycosphaerella fijiensis estExt_Genewise1Plus.C_20760 I
estExt_Genewise1Plus.C_chr_20819 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_20819 I
e_gw1.17.43.1 Nectria haematococca e_gw1.17.43.1 I
UCRNP2_645 Neofusicoccum parvum UCRNP2_645 I
NFIA_105830 Neosartorya fischeri CADNFIAG00009642 I
kal-1 Neurospora crassa NCU03593 D
estExt_fgenesh2_pg.C_10368 Neurospora discreta estExt_fgenesh2_pg.C_10368 I
NEUTE1DRAFT_116070 Neurospora tetrasperma NEUTE1DRAFT_116070 I
OIDMADRAFT_115588 Oidiodendron maius OIDMADRAFT_115588 I
OCS_03121 Ophiocordyceps sinensis OCS_03121 I
F503_08379 Ophiostoma piceae uamh F503_08379 I
PABG_03432 Paracoccidioides brasiliensis PABG_03432 I
PAAG_08226 Paracoccidioides sp lutzii PAAG_08226 I
PAXRUDRAFT_210495 Paxillus rubicundulus PAXRUDRAFT_210495 I
Pc22g12610 Penicillium chrysogenum Pc22g12610 I
PDIP_25010 Penicillium digitatum PDIP_25010 I
PEX1_092370 Penicillium expansum PEX1_092370 I
PITC_045370 Penicillium italicum PITC_045370 I
PMAA_096690 Penicillium marneffei PMAA_096690 I
PDE_03945 Penicillium oxalicum PDE_03945 I
PCH_Pc22g12610 Penicillium rubens PCH_Pc22g12610 I
U727_00430330251 Penicillium solitum U727_00430330251 I
PFICI_09611 Pestalotiopsis fici PFICI_09611 I
SNOG_16027 Phaeosphaeria nodorum SNOG_16027 I
fgenesh1_pg.C_scaffold_7000173 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_7000173 I
PHLGIDRAFT_100262 Phlebiopsis gigantea PHLGIDRAFT_100262 I
PILCRDRAFT_6622 Piloderma croceum PILCRDRAFT_6622 I
PISMIDRAFT_97497 Pisolithus microcarpus PISMIDRAFT_97497 I
M404DRAFT_929271 Pisolithus tinctorius M404DRAFT_929271 I
PLEOSDRAFT_1011447 Pleurotus ostreatus PLEOSDRAFT_1011447 I
PLICRDRAFT_366051 Plicaturopsis crispa PLICRDRAFT_366051 I
PODANS_2_6460 Podospora anserina PODANS_2_6460 I
EFA78939.1 Polysphondylium pallidum EFA78939.1 I
POSPLDRAFT_91424 Postia placenta POSPLDRAFT_91424 I
POSPLDRAFT_96600 Postia placenta POSPLDRAFT_96600 I
MYCFIDRAFT_108409 Pseudocercospora fijiensis MYCFIDRAFT_108409 I
GMDG_01699 Pseudogymnoascus destructans GMDG_01699 I
V499_08137 Pseudogymnoascus pannorum V499_08137 I
PTT_08847 Pyrenophora teres PTT_08847 I
PTRG_06001 Pyrenophora triticirepentis PTRG_06001 I
Z518_03392 Rhinocladiella mackenziei Z518_03392 I
V565_069290 Rhizoctonia solani V565_069290 I
SAPIO_CDS8330 Scedosporium apiospermum SAPIO_CDS8330 I
SPOG_00312 Schizosaccharomyces cryophilus SPOG_00312 I
SOCG_04229 Schizosaccharomyces octosporus SOCG_04229 I
phx1 Schizosaccharomyces pombe SPAC32A11.03c D
SCLCIDRAFT_793812 Scleroderma citrinum SCLCIDRAFT_793812 I
SBOR_4438 Sclerotinia borealis SBOR_4438 I
SERLA73DRAFT_90145 Serpula lacrymans SERLA73DRAFT_90145 I
SETTUDRAFT_88112 Setosphaeria turcica SETTUDRAFT_88112 I
SMAC_03124 Sordaria macrospora SMAC_03124 I
SEPMUDRAFT_147420 Sphaerulina musiva SEPMUDRAFT_147420 I
SPPG_03702 Spizellomyces punctatus SPPG_03702 I
SPBR_02439 Sporothrix brasiliensis SPBR_02439 I
HMPREF1624_02616 Sporothrix schenckii HMPREF1624_02616 I
S40288_03762 Stachybotrys chartarum S40288_03762 I
S40285_02237 Stachybotrys chlorohalonata S40285_02237 I
SNOG_16027 Stagonospora nodorum SNOG_16027 I
CY34DRAFT_634996 Suillus luteus CY34DRAFT_634996 I
PMAA_096690 Talaromyces marneffei PMAA_096690 I
TSTA_044650 Talaromyces stipitatus TSTA_044650 I
THITE_70031 Thielavia terrestris THITE_70031 I
UCRPA7_6974 Togninia minima UCRPA7_6974 I
VHEMI08470 Torrubiella hemipterigena VHEMI08470 I
TRIATDRAFT_229262 Trichoderma atroviride TRIATDRAFT_229262 I
TRIREDRAFT_77154 Trichoderma reesei TRIREDRAFT_77154 I
TRIVIDRAFT_36050 Trichoderma virens TRIVIDRAFT_36050 I
TEQG_04675 Trichophyton equinum TEQG_04675 I
H101_04135 Trichophyton interdigitale H101_04135 I
H102_02623 Trichophyton rubrum H102_02623 I
H105_02641 Trichophyton soudanense H105_02641 I
TESG_03886 Trichophyton tonsurans TESG_03886 I
TRV_05560 Trichophyton verrucosum TRV_05560 I
UREG_03315 Uncinocarpus reesii UREG_03315 I
UV8b_1861 Ustilaginoidea virens UV8b_1861 I
PV09_05176 Verruconis gallopava PV09_05176 I
VDBG_06534 Verticillium albo atrum VDBG_06534 I
VDBG_06534 Verticillium alfalfae VDBG_06534 I
VDAG_05070 Verticillium dahliae VDAG_05070 I
YALI0_A18469g Yarrowia lipolytica YALI0_A18469g I
Mycgr3G68153 Zymoseptoria tritici Mycgr3G68153 I