CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.24399s0028
(
Boechera stricta
)
WRC
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF08879 (WRC)
IPR014977
Bostr.24399s0028
T351547_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtGRF6
M02545_2.00
Arabidopsis thaliana
NNNNYDNN
NNHRNNNN
PBM
Weirauch et al.(2014)
pTH7356
1.000
1.000
AtGRF6
M07369_2.00
Arabidopsis thaliana
NNNNNHNTGTCAGA
TCTGACANDNNNNN
Dap-seq
OMalley et al.(2016)
AtGRF6_col_a
1.000
1.000
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.24399s0028.1.p
WRC
79
121
AEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSSRKP
Links
Other
WRC
family TFs
Other
Boechera stricta
TFs
254 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
HMG20A
Homo sapiens
ENSG00000140382
I
cassava14282.m1
Manihot esculenta
cassava14282.m1
N
PTTG_03070
Puccinia triticina
PTTG_03070
N
SERLA73DRAFT_158240
Serpula lacrymans
SERLA73DRAFT_158240
N
TRAES3BF116200180CFD_g
Triticum aestivum
TRAES3BF116200180CFD_g
N
Traes_5DL_BCFE39D13
Triticum aestivum
Traes_5DL_BCFE39D13
N
TRIUR3_05701
Triticum urartu
TRIUR3_05701
N
TRIUR3_17303
Triticum urartu
TRIUR3_17303
N
TVAG_468590
Trichomonas vaginalis
TVAG_468590
N
Ca_14341
Cicer arietinum
Ca_14341
N
PPA22145
Pristionchus pacificus
PPA22145
N
fgenesh2_pg.scaffold_535000011
Branchiostoma floridae
fgenesh2_pg.scaffold_535000011
N
Sakowv30045438m.g
Saccoglossus kowalevskii
Sakowv30045438m.g
N
SMU15010330
Schmidtea mediterranea
SMU15010330
N
SMU15030327
Schmidtea mediterranea
SMU15030327
N
CGOC_0001370301
Cylicostephanus goldi
CGOC_0001370301
N
GPLIN_001054700
Globodera pallida
GPLIN_001054700
N
SBAD_0001127201
Soboliphyme baturini
SBAD_0001127201
N
BGIOSGA016928
Oryza indica
BGIOSGA016928
N
OS04G0564600
Oryza sativa
OS04G0564600
N
ORUFI04G23400
Oryza rufipogon
ORUFI04G23400
N
ORGLA04G0188600
Oryza glaberrima
ORGLA04G0188600
N
OPUNC04G19550
Oryza punctata
OPUNC04G19550
N
ONIVA04G20340
Oryza nivara
ONIVA04G20340
N
OMERI04G18350
Oryza meridionalis
OMERI04G18350
N
OGLUM04G21840
Oryza glumaepatula
OGLUM04G21840
N
OBART04G21800
Oryza barthii
OBART04G21800
N
OB04G28810
Oryza brachyantha
OB04G28810
N
MELLADRAFT_86211
Melampsora laricipopulina
MELLADRAFT_86211
N
M422DRAFT_50085
Sphaerobolus stellatus
M422DRAFT_50085
N
GLOINDRAFT_16424
Rhizophagus irregularis
GLOINDRAFT_16424
N
GH17483
Drosophila grimshawi
FBgn0124953
N
F775_24487
Aegilops tauschii
F775_24487
N
DAPPUDRAFT_336128
Daphnia pulex
DAPPUDRAFT_336128
N