CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra002421
(
Brassica rapa
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03106 (WRKY)
IPR003657
Bra002421
T352231_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY38
M00901_2.00
Arabidopsis thaliana
NNRGTCAACBN
NVGTTGACYNN
PBM
Franco-Zorrilla et al.(2014)
WRKY38
0.863
0.814
WRKY62
M02561_2.00
Arabidopsis thaliana
TRGTCAAM
KTTGACYA
PBM
Weirauch et al.(2014)
pTH8246
0.841
0.644
WRKY63
M02546_2.00
Arabidopsis thaliana
NGGTCAAN
NTTGACCN
PBM
Weirauch et al.(2014)
pTH8182
0.833
0.627
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra002421.1-P
WRKY
105
165
YDGFLWRKYGQKSIKNSKYERSYYRCSYNIDHDCGARKHEQQIKENPPVYRTTYFGHHICK
Links
Other
WRKY
family TFs
Other
Brassica rapa
TFs
109 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29729.m002369
Ricinus communis
29729.m002369
I
0.809
Al_scaffold_0002_1233
Arabidopsis lyrata
Al_scaffold_0002_1233
I
0.829
AMTR_s00077p00103880
Amborella trichopoda
AMTR_s00077p00103880
I
0.810
BGIOSGA012571
Oryza indica
BGIOSGA012571
I
0.815
BGIOSGA017860
Oryza indica
BGIOSGA017860
I
0.811
Bo01002s040
Brassica oleracea
Bo01002s040
I
0.893
Bo2g024040
Brassica oleracea
Bo2g024040
I
0.866
Bo2g095820
Brassica oleracea
Bo2g095820
I
0.815
Bo5g068250
Brassica oleracea
Bo5g068250
I
0.833
Bostr.20129s0455
Boechera stricta
Bostr.20129s0455
I
0.826
Bostr.25463s0359
Boechera stricta
Bostr.25463s0359
I
0.817
Bostr.26527s0018
Boechera stricta
Bostr.26527s0018
I
0.853
Bostr.26959s0261
Boechera stricta
Bostr.26959s0261
I
0.821
Bostr.26959s0262
Boechera stricta
Bostr.26959s0262
I
0.836
Bostr.5022s0087
Boechera stricta
Bostr.5022s0087
I
0.809
Bostr.6251s0160
Boechera stricta
Bostr.6251s0160
I
0.834
Bra008454
Brassica rapa
Bra008454
I
0.816
Bra008459
Brassica rapa
Bra008459
I
0.815
Bra020196
Brassica rapa
Bra020196
I
0.866
Bra020197
Brassica rapa
Bra020197
I
0.866
Bra023211
Brassica rapa
Bra023211
I
0.833
Bra028918
Brassica rapa
Bra028918
I
0.844
Cagra.0255s0014
Capsella grandiflora
Cagra.0255s0014
I
0.830
Cagra.15225s0001
Capsella grandiflora
Cagra.15225s0001
I
0.832
Cagra.8153s0001
Capsella grandiflora
Cagra.8153s0001
I
0.864
Carubv10002472m.g
Capsella rubella
Carubv10002472m.g
I
0.864
Carubv10012720m.g
Capsella rubella
Carubv10012720m.g
I
0.830
Carubv10021420m.g
Capsella rubella
Carubv10021420m.g
I
0.832
Carubv10021860m.g
Capsella rubella
Carubv10021860m.g
I
0.827
Carubv10021899m.g
Capsella rubella
Carubv10021899m.g
I
0.835
Carubv10022120m.g
Capsella rubella
Carubv10022120m.g
I
0.829
Carubv10022162m.g
Capsella rubella
Carubv10022162m.g
I
0.812
cassava25180.valid.m1
Manihot esculenta
cassava25180.valid.m1
I
0.812
cassava36286.valid.m1
Manihot esculenta
cassava36286.valid.m1
I
0.814
cassava43790.valid.m1
Manihot esculenta
cassava43790.valid.m1
I
0.810
cassava7524.valid.m1
Manihot esculenta
cassava7524.valid.m1
I
0.811
cassava7525.valid.m1
Manihot esculenta
cassava7525.valid.m1
I
0.811
Ca_12915
Cicer arietinum
Ca_12915
I
0.825
Ca_18932
Cicer arietinum
Ca_18932
I
0.832
Cla018337
Citrullus lanatus
Cla018337
I
0.824
Cucsa.177060
Cucumis sativus
Cucsa.177060
I
0.817
Eucgr.K01289
Eucalyptus grandis
Eucgr.K01289
I
0.827
evm.TU.supercontig_86.64
Carica papaya
evm.TU.supercontig_86.64
I
0.819
evm.TU.supercontig_86.65
Carica papaya
evm.TU.supercontig_86.65
I
0.816
GLYMA03G00460
Glycine max
GLYMA03G00460
I
0.819
GLYMA09G41050
Glycine max
GLYMA09G41050
I
0.814
GLYMA13G34240
Glycine max
GLYMA13G34240
I
0.810
GLYMA13G34251
Glycine max
GLYMA13G34251
I
0.812
GLYMA13G34261
Glycine max
GLYMA13G34261
I
0.815
GLYMA16G34590
Glycine max
GLYMA16G34590
I
0.821
Gorai.005G003900
Gossypium raimondii
Gorai.005G003900
I
0.816
GSMUA_Achr8G25110_001
Musa acuminata
GSMUA_Achr8G25110_001
I
0.816
LPERR05G16170
Leersia perrieri
LPERR05G16170
I
0.811
MTR_0002s1250
Medicago truncatula
MTR_0002s1250
I
0.820
MTR_2g075610
Medicago truncatula
MTR_2g075610
I
0.836
MTR_2g075680
Medicago truncatula
MTR_2g075680
I
0.826
MTR_2g075690
Medicago truncatula
MTR_2g075690
I
0.822
MTR_2g075700
Medicago truncatula
MTR_2g075700
I
0.819
MTR_2g075750
Medicago truncatula
MTR_2g075750
I
0.836
MTR_7g073380
Medicago truncatula
MTR_7g073380
I
0.810
MTR_8g005750
Medicago truncatula
MTR_8g005750
I
0.835
OB05G17240
Oryza brachyantha
OB05G17240
I
0.811
OB05G27850
Oryza brachyantha
OB05G27850
I
0.819
OBART03G16400
Oryza barthii
OBART03G16400
I
0.815
OBART05G20330
Oryza barthii
OBART05G20330
I
0.817
OGLUM03G16780
Oryza glumaepatula
OGLUM03G16780
I
0.815
OGLUM05G21440
Oryza glumaepatula
OGLUM05G21440
I
0.817
OGLUM05G21470
Oryza glumaepatula
OGLUM05G21470
I
0.809
OGLUM05G21510
Oryza glumaepatula
OGLUM05G21510
I
0.817
OLONG_024544
Oryza longistaminata
OLONG_024544
I
0.815
OLONG_027124
Oryza longistaminata
OLONG_027124
I
0.809
OMERI03G14670
Oryza meridionalis
OMERI03G14670
I
0.815
OMERI05G18250
Oryza meridionalis
OMERI05G18250
I
0.811
ONIVA03G17390
Oryza nivara
ONIVA03G17390
I
0.815
ONIVA05G21460
Oryza nivara
ONIVA05G21460
I
0.811
OPUNC05G18000
Oryza punctata
OPUNC05G18000
I
0.819
OPUNC05G18030
Oryza punctata
OPUNC05G18030
I
0.813
ORGLA05G0177400
Oryza glaberrima
ORGLA05G0177400
I
0.817
ORUFI03G16960
Oryza rufipogon
ORUFI03G16960
I
0.815
ORUFI05G21600
Oryza rufipogon
ORUFI05G21600
I
0.811
OS03G0335200
Oryza sativa
OS03G0335200
I
0.815
OS05G0478800
Oryza sativa
OS05G0478800
I
0.811
Pavir.Ca00459
Panicum virgatum
Pavir.Ca00459
I
0.816
PGSC0003DMG400008391
Solanum tuberosum
PGSC0003DMG400008391
I
0.828
PGSC0003DMG400027582
Solanum tuberosum
PGSC0003DMG400027582
I
0.818
PGSC0003DMG400029207
Solanum tuberosum
PGSC0003DMG400029207
I
0.822
Pm003014
Prunus mume
Pm003014
I
0.812
POPTR_0006s10950
Populus trichocarpa
POPTR_0006s10950
I
0.811
POPTR_0016s14490
Populus trichocarpa
POPTR_0016s14490
I
0.818
PRUPE_ppa020736mg
Prunus persica
PRUPE_ppa020736mg
I
0.812
SapurV1A.0065s0580
Salix purpurea
SapurV1A.0065s0580
I
0.814
SapurV1A.0356s0010
Salix purpurea
SapurV1A.0356s0010
I
0.808
SapurV1A.0914s0120
Salix purpurea
SapurV1A.0914s0120
I
0.808
Si025181m.g
Setaria italica
Si025181m.g
I
0.813
Solyc09g015770.2
Solanum lycopersicum
Solyc09g015770.2
I
0.822
TCM_019689
Theobroma cacao
TCM_019689
I
0.812
Thhalv10000686m.g
Eutrema salsugineum
Thhalv10000686m.g
I
0.814
Thhalv10014700m.g
Eutrema salsugineum
Thhalv10014700m.g
I
0.844
Thhalv10015295m.g
Eutrema salsugineum
Thhalv10015295m.g
I
0.855
Thhalv10029232m.g
Eutrema salsugineum
Thhalv10029232m.g
I
0.810
WRKY38
Arabidopsis thaliana
AT5G22570
D
0.863
WRKY38
Arabidopsis lyrata
scaffold_602308.1
I
0.863
WRKY62
Arabidopsis lyrata
Al_scaffold_0006_13
I
0.841
WRKY62
Arabidopsis thaliana
AT5G01900
D
0.841
WRKY63
Arabidopsis thaliana
AT1G66600
D
0.833
WRKY64
Arabidopsis thaliana
AT1G66560
I
0.840
WRKY66
Arabidopsis thaliana
AT1G80590
I
0.825
WRKY67
Arabidopsis thaliana
AT1G66550
I
0.828
WRKY67
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2000969
I
0.824