CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

e_gw1.158.71.1 *(Physcomitrella patens)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03106 (WRKY)	IPR003657	e_gw1.158.71.1	T355632_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
WRKY6 M07377_2.00	Arabidopsis thaliana	DNNNHNDHNHNRGTCAACG	CGTTGACYNDNDHNDNNNH	Dap-seq OMalley et al.(2016) WRKY6_col_a	0.882	0.898
WRKY6 M07378_2.00	Arabidopsis thaliana	NNHNWRGTCAACKNH	DNMGTTGACYWNDNN	Dap-seq OMalley et al.(2016) WRKY6_colamp_a	0.882	0.898
WRKY31 M07408_2.00	Arabidopsis thaliana	NNNNHNNNNNDRGTCAACG	CGTTGACYHNNNNNDNNNN	Dap-seq OMalley et al.(2016) WRKY31_col_a	0.881	0.898
WRKY31 M07409_2.00	Arabidopsis thaliana	NHWRGTCAACKNH	DNMGTTGACYWDN	Dap-seq OMalley et al.(2016) WRKY31_colamp_a	0.881	0.898
WRKY42 M07404_2.00	Arabidopsis thaliana	NDWRGTCAACDNNNNDNNHNN	NNDNNHNNNNHGTTGACYWHN	Dap-seq OMalley et al.(2016) WRKY42_col_a	0.879	0.881
WRKY42 M07405_2.00	Arabidopsis thaliana	HNDNNNWRGTCAACKNHNDD	HHNDNMGTTGACYWNNNHND	Dap-seq OMalley et al.(2016) WRKY42_colamp_a	0.879	0.881
WRKY47 M00732_2.00	Arabidopsis thaliana	NNRGTCAACKN	NMGTTGACYNN	PBM Chang et al.(2013) pTH7913	0.878	0.881
WRKY47 M07402_2.00	Arabidopsis thaliana	WRGTCAAMGNHVDK	MHBDNCKTTGACYW	Dap-seq OMalley et al.(2016) WRKY47_col_a	0.878	0.881
WRKY47 M07403_2.00	Arabidopsis thaliana	NNNHWRGTCAACKNHNNNN	NNNNDNMGTTGACYWDNNN	Dap-seq OMalley et al.(2016) WRKY47_colamp_a	0.878	0.881
WRKY40 M02548_2.00	Arabidopsis thaliana	NRGTCAWN	NWTGACYN	PBM Weirauch et al.(2014) pTH8398	0.814	0.610
WRKY40 M07379_2.00	Arabidopsis thaliana	NNNAAAGTCAAVR	YBTTGACTTTNNN	Dap-seq OMalley et al.(2016) WRKY40_colamp_a	0.814	0.610
WRKY40 M07380_2.00	Arabidopsis thaliana	NNVAAAGTCAAVRNH	DNYBTTGACTTTBNN	Dap-seq OMalley et al.(2016) WRKY40_col	0.814	0.610
WRKY40 M08180_2.00	Arabidopsis thaliana	NNAGTCAANN	NNTTGACTNN	ChIP-seq Mathelier et al.(2014) MA1085.2	0.814	0.610
WRKY60 M02551_2.00	Arabidopsis thaliana	NYGGTCAAMNN	NNKTTGACCRN	PBM Weirauch et al.(2014) pTH7379	0.814	0.627
WRKY18 M02560_2.00	Arabidopsis thaliana	NNRGTCAANN	NNTTGACYNN	PBM Weirauch et al.(2014) pTH7360	0.812	0.661
WRKY18 M00900_2.00	Arabidopsis thaliana	NVGTCNN	NNGACBN	PBM Franco-Zorrilla et al.(2014) WRKY18	0.812	0.661
WRKY18 M07416_2.00	Arabidopsis thaliana	NNHRGTCAASR	YSTTGACYDNN	Dap-seq OMalley et al.(2016) WRKY18_col_a	0.812	0.661
WRKY18 M07417_2.00	Arabidopsis thaliana	NNNHWAGTCAANR	YNTTGACTWDNNN	Dap-seq OMalley et al.(2016) WRKY18_colamp_a	0.812	0.661
WRKY18 M11465_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY18_Q2	0.812	0.661
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
e_gw1.158.71.1	WRKY	2	60	NDGCQWRKYGQKMAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDVSILITTYEGTHNHP

Links
Other WRKY family TFs
Other *Physcomitrella patens* TFs

757 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ANCDUO_20381	Ancylostoma duodenale	ANCDUO_20381	N
BTMF_0001337801	Brugia timori	BTMF_0001337801	N
CGOC_0001023801	Cylicostephanus goldi	CGOC_0001023801	N
augustus_masked-nMf.1.1.scaf09259-processed-gene-0.1	Meloidogyne floridensis	augustus_masked-nMf.1.1.scaf09259-processed-gene-0.1	N
TCLT_0000655301	Thelazia callipaeda	TCLT_0000655301	N

e_gw1.158.71.1 (Physcomitrella patens) WRKY

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

757 Related TFs

e_gw1.158.71.1 **(Physcomitrella patens)
WRKY**