Carubv10002472m.g (Capsella rubella)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Carubv10002472m.g T355943_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY38
M00901_2.00 		Arabidopsis thaliana
NNRGTCAACBN
NVGTTGACYNN		 PBM
Franco-Zorrilla et al.(2014)
WRKY38 		0.871 0.915
WRKY62
M02561_2.00 		Arabidopsis thaliana
TRGTCAAM
KTTGACYA		 PBM
Weirauch et al.(2014)
pTH8246 		0.833 0.661
WRKY63
M02546_2.00 		Arabidopsis thaliana
NGGTCAAN
NTTGACCN		 PBM
Weirauch et al.(2014)
pTH8182 		0.824 0.661
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10002472m WRKY 113 173

Links

Other WRKY family TFs
Other Capsella rubella TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.8153s0001 Capsella grandiflora Cagra.8153s0001 I 0.905
Bostr.26527s0018 Boechera stricta Bostr.26527s0018 I 0.894
WRKY38 Arabidopsis thaliana AT5G22570 D 0.871
WRKY38 Arabidopsis lyrata scaffold_602308.1 I 0.871
Bra020196 Brassica rapa Bra020196 I 0.869
Bo2g024040 Brassica oleracea Bo2g024040 I 0.868
Bra020197 Brassica rapa Bra020197 I 0.868
Thhalv10015295m.g Eutrema salsugineum Thhalv10015295m.g I 0.866
Bo01002s040 Brassica oleracea Bo01002s040 I 0.864
Bra002421 Brassica rapa Bra002421 I 0.864
Bra028918 Brassica rapa Bra028918 I 0.848
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I 0.847
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I 0.839
Bo5g068250 Brassica oleracea Bo5g068250 I 0.837
Bra023211 Brassica rapa Bra023211 I 0.837
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.836
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I 0.836
Carubv10021420m.g Capsella rubella Carubv10021420m.g I 0.836
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I 0.835
Carubv10012720m.g Capsella rubella Carubv10012720m.g I 0.835
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I 0.834
WRKY62 Arabidopsis lyrata Al_scaffold_0006_13 I 0.833
WRKY62 Arabidopsis thaliana AT5G01900 D 0.833
WRKY67 Arabidopsis thaliana AT1G66550 I 0.831
WRKY64 Arabidopsis thaliana AT1G66560 I 0.831
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I 0.831
WRKY66 Arabidopsis thaliana AT1G80590 I 0.830
Carubv10021860m.g Capsella rubella Carubv10021860m.g I 0.830
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I 0.829
WRKY63 Arabidopsis thaliana AT1G66600 D 0.824
Ca_18932 Cicer arietinum Ca_18932 I 0.823
Carubv10021899m.g Capsella rubella Carubv10021899m.g I 0.822
evm.TU.supercontig_86.64 Carica papaya evm.TU.supercontig_86.64 I 0.822
MTR_8g005750 Medicago truncatula MTR_8g005750 I 0.821
Carubv10022120m.g Capsella rubella Carubv10022120m.g I 0.821
Bra008454 Brassica rapa Bra008454 I 0.820
MTR_2g075610 Medicago truncatula MTR_2g075610 I 0.820
MTR_2g075750 Medicago truncatula MTR_2g075750 I 0.820
cassava36286.valid.m1 Manihot esculenta cassava36286.valid.m1 I 0.820
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I 0.820
Carubv10022162m.g Capsella rubella Carubv10022162m.g I 0.819
evm.TU.supercontig_86.65 Carica papaya evm.TU.supercontig_86.65 I 0.819
TCM_019689 Theobroma cacao TCM_019689 I 0.818
Bo2g095820 Brassica oleracea Bo2g095820 I 0.817
Bra008459 Brassica rapa Bra008459 I 0.817
MTR_2g075680 Medicago truncatula MTR_2g075680 I 0.817
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I 0.816
Bostr.20129s0455 Boechera stricta Bostr.20129s0455 I 0.815
Gorai.005G003900 Gossypium raimondii Gorai.005G003900 I 0.815
GLYMA13G34261 Glycine max GLYMA13G34261 I 0.813
MTR_2g075690 Medicago truncatula MTR_2g075690 I 0.813
GLYMA03G00460 Glycine max GLYMA03G00460 I 0.812
PGSC0003DMG400008391 Solanum tuberosum PGSC0003DMG400008391 I 0.812
Si025181m.g Setaria italica Si025181m.g I 0.812
Thhalv10029232m.g Eutrema salsugineum Thhalv10029232m.g I 0.812
PRUPE_ppa020736mg Prunus persica PRUPE_ppa020736mg I 0.811
Pm003013 Prunus mume Pm003013 I 0.811
Pm003014 Prunus mume Pm003014 I 0.811
OB05G17240 Oryza brachyantha OB05G17240 I 0.810
POPTR_0016s14490 Populus trichocarpa POPTR_0016s14490 I 0.810
PRUPE_ppa026704mg Prunus persica PRUPE_ppa026704mg I 0.810
Eucgr.K01289 Eucalyptus grandis Eucgr.K01289 I 0.810
PGSC0003DMG400027582 Solanum tuberosum PGSC0003DMG400027582 I 0.809
VIT_08s0058g01390 Vitis vinifera VIT_08s0058g01390 I 0.809
Ca_12915 Cicer arietinum Ca_12915 I 0.809
Cla018337 Citrullus lanatus Cla018337 I 0.809
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I 0.808