CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10021420m.g
(
Capsella rubella
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
Carubv10021420m.g
T355976_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY63
M02546_2.00
Arabidopsis thaliana
NGGTCAAN
NTTGACCN
PBM
Weirauch et al.(2014)
pTH8182
0.875
0.847
WRKY38
M00901_2.00
Arabidopsis thaliana
NNRGTCAACBN
NVGTTGACYNN
PBM
Franco-Zorrilla et al.(2014)
WRKY38
0.853
0.695
WRKY62
M02561_2.00
Arabidopsis thaliana
TRGTCAAM
KTTGACYA
PBM
Weirauch et al.(2014)
pTH8246
0.847
0.627
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10021420m
WRKY
93
153
DDGFAWRKYGQKTIKTSVHQRSYYRCAYAKDRNCNATKRVQMIKDSPPVFRTSYMGQHTCK
Links
Other
WRKY
family TFs
Other
Capsella rubella
TFs
140 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_02479
Aegilops tauschii
F775_02479
N
0.812
Al_scaffold_0002_1233
Arabidopsis lyrata
Al_scaffold_0002_1233
I
0.874
WRKY62
Arabidopsis lyrata
Al_scaffold_0006_13
I
0.847
WRKY67
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2000969
I
0.870
WRKY38
Arabidopsis lyrata
scaffold_602308.1
I
0.853
WRKY67
Arabidopsis thaliana
AT1G66550
I
0.867
WRKY64
Arabidopsis thaliana
AT1G66560
I
0.863
WRKY63
Arabidopsis thaliana
AT1G66600
D
0.875
WRKY66
Arabidopsis thaliana
AT1G80590
I
0.872
WRKY62
Arabidopsis thaliana
AT5G01900
D
0.847
WRKY38
Arabidopsis thaliana
AT5G22570
D
0.853
Bostr.20129s0455
Boechera stricta
Bostr.20129s0455
I
0.843
Bostr.25463s0359
Boechera stricta
Bostr.25463s0359
I
0.851
Bostr.26527s0018
Boechera stricta
Bostr.26527s0018
I
0.842
Bostr.26959s0259
Boechera stricta
Bostr.26959s0259
I
0.831
Bostr.26959s0261
Boechera stricta
Bostr.26959s0261
I
0.856
Bostr.26959s0262
Boechera stricta
Bostr.26959s0262
I
0.871
Bostr.5022s0087
Boechera stricta
Bostr.5022s0087
I
0.852
Bostr.6251s0160
Boechera stricta
Bostr.6251s0160
I
0.847
BRADI4G44370
Brachypodium distachyon
BRADI4G44370
N
0.811
Bo01002s040
Brassica oleracea
Bo01002s040
I
0.832
Bo2g024040
Brassica oleracea
Bo2g024040
I
0.843
Bo2g095820
Brassica oleracea
Bo2g095820
I
0.853
Bo5g068250
Brassica oleracea
Bo5g068250
I
0.839
Bra002421
Brassica rapa
Bra002421
I
0.832
Bra008454
Brassica rapa
Bra008454
I
0.841
Bra008456
Brassica rapa
Bra008456
I
0.830
Bra008459
Brassica rapa
Bra008459
I
0.853
Bra020196
Brassica rapa
Bra020196
I
0.845
Bra020197
Brassica rapa
Bra020197
I
0.843
Bra023211
Brassica rapa
Bra023211
I
0.839
Bra028918
Brassica rapa
Bra028918
I
0.847
Cagra.0255s0014
Capsella grandiflora
Cagra.0255s0014
I
0.856
Cagra.15225s0001
Capsella grandiflora
Cagra.15225s0001
I
0.890
Cagra.20277s0001
Capsella grandiflora
Cagra.20277s0001
I
0.829
Cagra.8153s0001
Capsella grandiflora
Cagra.8153s0001
I
0.836
Carubv10002472m.g
Capsella rubella
Carubv10002472m.g
I
0.836
Carubv10012720m.g
Capsella rubella
Carubv10012720m.g
I
0.856
Carubv10021860m.g
Capsella rubella
Carubv10021860m.g
I
0.857
Carubv10021899m.g
Capsella rubella
Carubv10021899m.g
I
0.855
Carubv10022120m.g
Capsella rubella
Carubv10022120m.g
I
0.850
Carubv10022162m.g
Capsella rubella
Carubv10022162m.g
I
0.867
evm.TU.supercontig_86.64
Carica papaya
evm.TU.supercontig_86.64
I
0.817
evm.TU.supercontig_86.65
Carica papaya
evm.TU.supercontig_86.65
I
0.818
Ca_18932
Cicer arietinum
Ca_18932
I
0.826
Cucsa.177060
Cucumis sativus
Cucsa.177060
I
0.811
Thhalv10000686m.g
Eutrema salsugineum
Thhalv10000686m.g
I
0.851
Thhalv10014700m.g
Eutrema salsugineum
Thhalv10014700m.g
I
0.847
Thhalv10015295m.g
Eutrema salsugineum
Thhalv10015295m.g
I
0.858
Thhalv10029232m.g
Eutrema salsugineum
Thhalv10029232m.g
I
0.849
gene13547-v1.0-hybrid
Fragaria vesca
gene13547-v1.0-hybrid
I
0.810
Gorai.005G003900
Gossypium raimondii
Gorai.005G003900
I
0.809
LPERR05G06630
Leersia perrieri
LPERR05G06630
I
0.822
LPERR05G16170
Leersia perrieri
LPERR05G16170
I
0.816
LPERR11G00960
Leersia perrieri
LPERR11G00960
I
0.819
LPERR12G01070
Leersia perrieri
LPERR12G01070
I
0.816
Lus10025133.g
Linum usitatissimum
Lus10025133.g
I
0.809
MDP0000828055
Malus domestica
MDP0000828055
I
0.808
cassava36286.valid.m1
Manihot esculenta
cassava36286.valid.m1
I
0.809
MTR_2g075610
Medicago truncatula
MTR_2g075610
I
0.814
MTR_2g075750
Medicago truncatula
MTR_2g075750
I
0.814
MTR_5g067680
Medicago truncatula
MTR_5g067680
I
0.808
MTR_8g005750
Medicago truncatula
MTR_8g005750
I
0.813
mgf002542m
Mimulus guttatus
mgf002542m
I
0.817
mgf009193m
Mimulus guttatus
mgf009193m
I
0.811
GSMUA_Achr5G08580_001
Musa acuminata
GSMUA_Achr5G08580_001
I
0.809
GSMUA_Achr7G22020_001
Musa acuminata
GSMUA_Achr7G22020_001
I
0.815
GSMUA_Achr8G25110_001
Musa acuminata
GSMUA_Achr8G25110_001
I
0.826
OBART05G08130
Oryza barthii
OBART05G08130
I
0.818
OBART05G20330
Oryza barthii
OBART05G20330
I
0.811
OBART05G20340
Oryza barthii
OBART05G20340
I
0.809
OBART11G01100
Oryza barthii
OBART11G01100
N
0.810
OBART11G01110
Oryza barthii
OBART11G01110
I
0.812
OB05G17240
Oryza brachyantha
OB05G17240
I
0.827
OB05G27830
Oryza brachyantha
OB05G27830
I
0.812
OB05G27850
Oryza brachyantha
OB05G27850
I
0.811
ORGLA05G0070000
Oryza glaberrima
ORGLA05G0070000
I
0.818
ORGLA05G0177200
Oryza glaberrima
ORGLA05G0177200
I
0.811
ORGLA05G0177400
Oryza glaberrima
ORGLA05G0177400
I
0.811
ORGLA09G0026100
Oryza glaberrima
ORGLA09G0026100
I
0.817
ORGLA11G0201900
Oryza glaberrima
ORGLA11G0201900
N
0.810
ORGLA11G0202000
Oryza glaberrima
ORGLA11G0202000
I
0.812
ORGLA12G0007500
Oryza glaberrima
ORGLA12G0007500
N
0.813
OGLUM05G08540
Oryza glumaepatula
OGLUM05G08540
I
0.818
OGLUM05G21420
Oryza glumaepatula
OGLUM05G21420
I
0.811
OGLUM05G21440
Oryza glumaepatula
OGLUM05G21440
I
0.811
OGLUM05G21470
Oryza glumaepatula
OGLUM05G21470
I
0.813
OGLUM11G00850
Oryza glumaepatula
OGLUM11G00850
I
0.812
OGLUM11G00870
Oryza glumaepatula
OGLUM11G00870
I
0.812
OGLUM12G01400
Oryza glumaepatula
OGLUM12G01400
N
0.810
BGIOSGA017556
Oryza indica
BGIOSGA017556
I
0.818
BGIOSGA017860
Oryza indica
BGIOSGA017860
I
0.818
BGIOSGA030113
Oryza indica
BGIOSGA030113
I
0.820
BGIOSGA030346
Oryza indica
BGIOSGA030346
I
0.811
BGIOSGA034612
Oryza indica
BGIOSGA034612
I
0.812
BGIOSGA034613
Oryza indica
BGIOSGA034613
N
0.810
BGIOSGA036757
Oryza indica
BGIOSGA036757
N
0.810
OLONG_002978
Oryza longistaminata
OLONG_002978
I
0.822
OLONG_019907
Oryza longistaminata
OLONG_019907
I
0.818
OLONG_027124
Oryza longistaminata
OLONG_027124
I
0.813
OMERI05G18170
Oryza meridionalis
OMERI05G18170
I
0.811
OMERI05G18250
Oryza meridionalis
OMERI05G18250
I
0.818
OMERI05G18260
Oryza meridionalis
OMERI05G18260
I
0.809
OMERI11G01520
Oryza meridionalis
OMERI11G01520
N
0.809
ONIVA05G08650
Oryza nivara
ONIVA05G08650
I
0.818
ONIVA05G21440
Oryza nivara
ONIVA05G21440
I
0.811
ONIVA05G21460
Oryza nivara
ONIVA05G21460
I
0.818
ONIVA09G03360
Oryza nivara
ONIVA09G03360
I
0.820
ONIVA11G01050
Oryza nivara
ONIVA11G01050
N
0.810
ONIVA11G01230
Oryza nivara
ONIVA11G01230
N
0.810
ONIVA11G01240
Oryza nivara
ONIVA11G01240
I
0.812
OPUNC05G07410
Oryza punctata
OPUNC05G07410
I
0.818
OPUNC05G17980
Oryza punctata
OPUNC05G17980
I
0.814
OPUNC05G18000
Oryza punctata
OPUNC05G18000
I
0.811
OPUNC11G00970
Oryza punctata
OPUNC11G00970
N
0.810
OPUNC12G00970
Oryza punctata
OPUNC12G00970
N
0.810
ORUFI05G08750
Oryza rufipogon
ORUFI05G08750
I
0.818
ORUFI05G21560
Oryza rufipogon
ORUFI05G21560
I
0.811
ORUFI05G21600
Oryza rufipogon
ORUFI05G21600
I
0.818
OS05G0478400
Oryza sativa
OS05G0478400
I
0.811
OS05G0478800
Oryza sativa
OS05G0478800
I
0.818
OS11G0117400
Oryza sativa
OS11G0117400
N
0.810
OS12G0116600
Oryza sativa
OS12G0116600
N
0.810
Pavir.Ca00459
Panicum virgatum
Pavir.Ca00459
I
0.826
Pavir.Cb02194
Panicum virgatum
Pavir.Cb02194
I
0.815
Pavir.Gb01556
Panicum virgatum
Pavir.Gb01556
I
0.814
Pavir.Ha01933
Panicum virgatum
Pavir.Ha01933
I
0.815
Pavir.J39511
Panicum virgatum
Pavir.J39511
I
0.815
PDK_20s1314561g002
Phoenix dactylifera
PDK_20s1314561g002
I
0.809
PDK_20s1519811g001
Phoenix dactylifera
PDK_20s1519811g001
I
0.810
Pm003014
Prunus mume
Pm003014
I
0.811
PRUPE_ppa020736mg
Prunus persica
PRUPE_ppa020736mg
I
0.811
SELMODRAFT_113487
Selaginella moellendorffii
SELMODRAFT_113487
I
0.808
SELMODRAFT_29692
Selaginella moellendorffii
SELMODRAFT_29692
I
0.808
Si012735m.g
Setaria italica
Si012735m.g
I
0.813
Si025181m.g
Setaria italica
Si025181m.g
I
0.812
Sb08g002560
Sorghum bicolor
Sb08g002560
N
0.808
TCM_019689
Theobroma cacao
TCM_019689
I
0.813
TRIUR3_26571
Triticum urartu
TRIUR3_26571
N
0.812
VIT_08s0058g01390
Vitis vinifera
VIT_08s0058g01390
I
0.824