CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SKUD_138701
(
Saccharomyces kudriavzevii
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00172 (Zn_clus)
IPR001138
SKUD_138701
T383869_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERT1
M00077_2.00
Saccharomyces cerevisiae
NYCGGAAY
RTTCCGRN
PBM
Badis et al.(2008)
YBR239C_2158
0.683
1.000
ERT1
M01572_2.00
Saccharomyces cerevisiae
NNCGGARNN
NNYTCCGNN
PBM
Zhu et al.(2009)
Ybr239c
0.683
1.000
ERT1
M07504_2.00
Saccharomyces cerevisiae
DYCGGAAY
RTTCCGRH
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0420.1
0.683
1.000
ERT1
M08646_2.00
Saccharomyces cerevisiae
DYCGGAAY
RTTCCGRH
Misc
DeBoer et al.(2011)
YBR239C_564
0.683
1.000
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EJT42820
Zinc cluster
37
77
VACVNCSRLHVSCEAKRPCLRCISKGLTATCVDAPRKKSKY
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces kudriavzevii
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ERT1
Saccharomyces cerevisiae
YBR239C
D
0.683
1958_YBR239C
Saccharomyces paradoxus
1958_YBR239C
I
0.683
2111_Multiple
Saccharomyces bayanus
2111_Multiple
I
0.683
SU7_0276
Saccharomyces arboricola
SU7_0276
I
0.666
4840_YBR239C
Saccharomyces mikatae
4840_YBR239C
I
0.666
ZYRO0G21582g
Zygosaccharomyces rouxii
ZYRO0G21582g
I
0.625
TDEL_0B04020
Torulaspora delbrueckii
TDEL_0B04020
I
0.597
NDAI_0F02030
Naumovozyma dairenensis
NDAI_0F02030
I
0.577
CAGL0K06985g
Candida glabrata
CAGL0K06985g
I
0.556
TBLA_0D03550
Tetrapisispora blattae
TBLA_0D03550
I
0.538