CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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URC2
(
Saccharomyces cerevisiae
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00172 (Zn_clus)
IPR001138
YDR520C
T388343_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
URC2
M00083_2.00
Saccharomyces cerevisiae
CGGVNWWHNN
NNDWWNBCCG
PBM
Badis et al.(2008)
YDR520c_2043
(Direct)
(Direct)
URC2
M01578_2.00
Saccharomyces cerevisiae
NNNNNNNNDN
NHNNNNNNNN
PBM
Zhu et al.(2009)
Ydr520c
(Direct)
(Direct)
URC2
M07510_2.00
Saccharomyces cerevisiae
HCGGANWTAN
NTAWNTCCGD
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0422.1
(Direct)
(Direct)
URC2
M08659_2.00
Saccharomyces cerevisiae
HCGGANWTAN
NTAWNTCCGD
Misc
DeBoer et al.(2011)
YDR520C_553
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.537
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00083_2.00
Zinc cluster
51
91
FSCDTCRRVKTRCDFEPFIGKCYRCNVLQLDCSLARNKDNE
M01578_2.00
Zinc cluster
70
110
FSCDTCRRVKTRCDFEPFIGKCYRCNVLQLDCSLARNKDNE
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
YDR520C
Zinc cluster
70
110
FSCDTCRRVKTRCDFEPFIGKCYRCNVLQLDCSLARNKDNE
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces cerevisiae
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
5824_YDR520C
Saccharomyces bayanus
5824_YDR520C
I
0.683
SU7_2814
Saccharomyces arboricola
SU7_2814
I
0.681
5357_YDR520C
Saccharomyces paradoxus
5357_YDR520C
I
0.668
KAFR_0G01220
Kazachstania africana
KAFR_0G01220
I
0.600
TPHA_0E03830
Tetrapisispora phaffii
TPHA_0E03830
I
0.578
5481_YDR520C
Saccharomyces mikatae
5481_YDR520C
I
0.562
Kpol_2002p26
Vanderwaltozyma polyspora
Kpol_2002p26
I
0.538