CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

BGIOSGA005557 *(Oryza indica)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	BGIOSGA005557	T000561_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.762	0.800
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.762	0.800
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.751	0.860
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.735	0.740
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.719	0.760
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.719	0.760
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.719	0.760
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.708	0.720
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.708	0.720
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.708	0.720
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.707	0.740
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.707	0.740
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.707	0.740
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.706	0.720
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.703	0.680
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.703	0.720
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.703	0.720
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.701	0.700
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.701	0.700
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.697	0.700
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.697	0.700
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.696	0.740
ERF7 M01617_2.00	Arabidopsis thaliana	NGCCGNMNNN	NNNKNCGGCN	PBM Weirauch et al.(2014) pTH7606	0.696	0.680
ERF7 M06620_2.00	Arabidopsis thaliana	YHNHYNYYDYCDCCGCCGYCD	HGRCGGCGGHGRHRRNRDNDR	Dap-seq OMalley et al.(2016) ERF7_col_a	0.696	0.680
ERF7 M06621_2.00	Arabidopsis thaliana	NNNHNNHNHHDSCGCCGCCRH	DYGGCGGCGSHDDNDNNDNNN	Dap-seq OMalley et al.(2016) ERF7_colamp_a	0.696	0.680
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.694	0.680
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.694	0.680
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.694	0.680
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.693	0.700
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.693	0.700
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.693	0.700
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.692	0.700
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.688	0.700
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.688	0.700
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.688	0.660
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.688	0.660
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.686	0.700
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.686	0.700
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.684	0.700
RAP2-6 M00717_2.00	Arabidopsis thaliana	NBGCYGNH	DNCRGCVN	PBM Chang et al.(2013) pTH7225	0.682	0.760
RAP2-6 M00841_2.00	Arabidopsis thaliana	NGCCGHHNNN	NNNDDCGGCN	PBM Franco-Zorrilla et al.(2014) RAP2.6	0.682	0.760
RAP2-6 M06579_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYMD	HKRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) RAP26_col_a	0.682	0.760
RAP2-6 M06580_2.00	Arabidopsis thaliana	CGCCGY	RCGGCG	Dap-seq OMalley et al.(2016) RAP26_colamp_a	0.682	0.760
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.681	0.680
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.681	0.680
ERF8 M01608_2.00	Arabidopsis thaliana	MGCCGNMNNN	NNNKNCGGCK	PBM Weirauch et al.(2014) pTH8095	0.681	0.700
ERF8 M06586_2.00	Arabidopsis thaliana	NYHDYCKCCGCCGYH	DRCGGCGGMGRHDRN	Dap-seq OMalley et al.(2016) ERF8_col_a	0.681	0.700
ERF8 M06587_2.00	Arabidopsis thaliana	HNNHDSCGCCGYCRHHDN	NHDDYGRCGGCGSHDNND	Dap-seq OMalley et al.(2016) ERF8_colamp_a	0.681	0.700
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
BGIOSGA005557-PA	AP2	90	141	SRYRGVRRRPWGKWAAEIRDPRRAVRKWLGTFDTAEDAARAYDVAALEFRGQ

Links
Other AP2 family TFs
Other *Oryza indica* TFs

1314 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aan_R009163	Calypte anna	Aan_R009163	I
Afo_R007440	Aptenodytes forsteri	Afo_R007440	I
Alligator_sinensis_CCG009030.1	Alligator sinensis	Alligator_sinensis_CCG009030.1	I
ENSACAG00000003497	Anolis carolinensis	ENSACAG00000003497	I
ENSAMEG00000007513	Ailuropoda melanoleuca	ENSAMEG00000007513	I
TERF2	Bos taurus	ENSBTAG00000007617	I
ENSBTAP00000010016-D1	Bos grunniens	ENSBTAP00000010016-D1	I
TERF2	Canis familiaris	ENSCAFG00000020267	I
TERF2	Choloepus hoffmanni	ENSCHOG00000010819	I
TERF2	Callithrix jacchus	ENSCJAG00000015339	I
TERF2	Cavia porcellus	ENSCPOG00000003717	I
ENSCSAG00000004144	Chlorocebus sabaeus	ENSCSAG00000004144	I
TERF2	Dasypus novemcinctus	ENSDNOG00000014627	I
Terf2	Dipodomys ordii	ENSDORG00000011208	I
TERF2	Equus caballus	ENSECAG00000024534	I
TERF2	Echinops telfairi	ENSETEG00000013553	I
ENSFALG00000002781	Ficedula albicollis	ENSFALG00000002781	I
ENSFCAG00000013579	Felis catus	ENSFCAG00000013579	I
TERF2	Homo sapiens	ENSG00000132604	I
ENSGALG00000000657	Gallus gallus	ENSGALG00000000657	N
TERF2	Gorilla gorilla	ENSGGOG00000004372	I
ENSLOCG00000001317	Lepisosteus oculatus	ENSLOCG00000001317	I
TERF2	Myotis lucifugus	ENSMLUG00000006584	I
TERF2	Macaca mulatta	ENSMMUG00000016633	I
TERF2	Monodelphis domestica	ENSMODG00000002766	I
ENSMPUG00000007352	Mustela putorius furo	ENSMPUG00000007352	I
Terf2	Mus musculus	ENSMUSG00000031921	D
ENSNLEG00000005506	Nomascus leucogenys	ENSNLEG00000005506	I
TERF2	Ornithorhynchus anatinus	ENSOANG00000002365	I
ENSOARG00000003567	Ovis aries	ENSOARG00000003567	I
TERF2	Oryctolagus cuniculus	ENSOCUG00000017662	I
TERF2	Otolemur garnettii	ENSOGAG00000008071	I
TERF2	Ochotona princeps	ENSOPRG00000006995	I
ENSP00000254942	Macaca fascicularis	ENSP00000254942	I
ENSPANG00000018001	Papio anubis	ENSPANG00000018001	I
TERF2	Procavia capensis	ENSPCAG00000006534	I
ENSPPYG00000007505	Pongo abelii	ENSPPYG00000007505	I
ENSPSIG00000011530	Pelodiscus sinensis	ENSPSIG00000011530	I
TERF2	Pan troglodytes	ENSPTRG00000008281	I
TERF2	Pteropus vampyrus	ENSPVAG00000015982	I
Terf2	Rattus norvegicus	ENSRNOG00000020435	I
ENSSHAG00000013733	Sarcophilus harrisii	ENSSHAG00000013733	I
TERF2	Sus scrofa	ENSSSCG00000002762	I
ENSSTOG00000012882	Ictidomys tridecemlineatus	ENSSTOG00000012882	I
TERF2	Tupaia belangeri	ENSTBEG00000011528	I
ENSTGUG00000008090	Taeniopygia guttata	ENSTGUG00000008090	I
ENSTSYG00000008563	Tarsius syrichta	ENSTSYG00000008563	I
TERF2	Tursiops truncatus	ENSTTRG00000010015	I
TERF2	Vicugna pacos	ENSVPAG00000003993	I
Gfo_R000556	Geospiza fortis	Gfo_R000556	N
Myotis_brandtii_TERF2_10022452	Myotis brandtii	Myotis_brandtii_TERF2_10022452	I
Pvit_16279	Pogona vitticeps	Pvit_16279	I
Tal_R010022	Tyto alba	Tal_R010022	I
terf2.L	Xenopus laevis	XB-GENE-990302	I

BGIOSGA005557 (Oryza indica) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1314 Related TFs

BGIOSGA005557 **(Oryza indica)
AP2**