Bo1g004940 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo1g004940 T000713_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-10
M00850_2.00 		Arabidopsis thaliana
NNRCCGHCNN
NNGDCGGYNN		 PBM
Franco-Zorrilla et al.(2014)
DEAR4 		0.815 0.980
ERF010
M06690_2.00 		Arabidopsis thaliana
HHNHHDYCACCGHCD
HGDCGGTGRHDDNDD		 Dap-seq
OMalley et al.(2016)
DEAR2_col_a 		0.814 0.940
ERF010
M06691_2.00 		Arabidopsis thaliana
NNNHDBCACCGACAH
DTGTCGGTGVHDNNN		 Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a 		0.814 0.940
ERF011
M06628_2.00 		Arabidopsis thaliana
YHNHHDYCACCGHCN
NGDCGGTGRHDDNDR		 Dap-seq
OMalley et al.(2016)
CEJ1_col_a 		0.813 0.920
ERF011
M06629_2.00 		Arabidopsis thaliana
NDNCACCGACMHH
DDKGTCGGTGNHN		 Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a 		0.813 0.920
ERF008
M00844_2.00 		Arabidopsis thaliana
SHRCCGHC
GDCGGYDS		 PBM
Franco-Zorrilla et al.(2014)
DEAR3 		0.805 0.960
ERF008
M01048_2.00 		Arabidopsis thaliana
CRCCGMCN
NGKCGGYG		 PBM
Sullivan et al.(2014)
pTH7672 		0.805 0.960
ERF008
M06602_2.00 		Arabidopsis thaliana
NNNNNBCACCGACAHHN
NDDTGTCGGTGVNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR3_col_a 		0.805 0.960
ERF008
M06603_2.00 		Arabidopsis thaliana
NNBCACCGACAWH
DWTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a 		0.805 0.960
RAP2-9
M06633_2.00 		Arabidopsis thaliana
NNNNNNNDBCACCGACMHH
DDKGTCGGTGVHNNNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR5_col_a 		0.760 0.920
RAP2-9
M06634_2.00 		Arabidopsis thaliana
NCACCGACMHH
DDKGTCGGTGN		 Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a 		0.760 0.920
RAP2-1
M06582_2.00 		Arabidopsis thaliana
NHDYCRCCGMCAH
DTGKCGGYGRHDN		 Dap-seq
OMalley et al.(2016)
RAP21_col_a 		0.728 0.860
RAP2-1
M06583_2.00 		Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN
NNNNNHDDTGTCGGTGVHDN		 Dap-seq
OMalley et al.(2016)
RAP21_colamp_a 		0.728 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g004940.1 AP2 27 78

Links

Other AP2 family TFs
Other Brassica oleracea TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CFIO01_13191 Colletotrichum fioriniae CFIO01_13191 N
CMQ_7830 Grosmannia clavigera CMQ_7830 N
CTHT_0061100 Chaetomium thermophilum CTHT_0061100 N
estExt_fgenesh1_pm.C_sca_1_chr1_3_00106 Nectria haematococca estExt_fgenesh1_pm.C_sca_1_chr1_3_00106 N
estExt_Genewise1Plus.C_140036 Cryphonectria parasitica estExt_Genewise1Plus.C_140036 N
estExt_Genewise1Plus.C_40043 Neurospora discreta estExt_Genewise1Plus.C_40043 N
F503_04484 Ophiostoma piceae uamh F503_04484 N
FFUJ_01368 Fusarium fujikuroi FFUJ_01368 N
FGRRES_01176 Fusarium graminearum FGRRES_01176 N
FOXG_00215 Fusarium oxysporum FOXG_00215 N
FPSE_02607 Fusarium pseudograminearum FPSE_02607 N
FVEG_01303 Fusarium verticillioides FVEG_01303 N
GGTG_12840 Gaeumannomyces graminis GGTG_12840 N
HMPREF1624_07538 Sporothrix schenckii HMPREF1624_07538 N
MAPG_00613 Magnaporthe poae MAPG_00613 N
MGG_14728 Magnaporthe oryzae MGG_14728 N
NCU08594 Neurospora crassa NCU08594 N
NechaG103092 Fusarium solani NechaG103092 N
NEUTE1DRAFT_151002 Neurospora tetrasperma NEUTE1DRAFT_151002 N
PFICI_01190 Pestalotiopsis fici PFICI_01190 N
S40285_00890 Stachybotrys chlorohalonata S40285_00890 N
S40288_08143 Stachybotrys chartarum S40288_08143 N
SMAC_04892 Sordaria macrospora SMAC_04892 N
SPBR_06896 Sporothrix brasiliensis SPBR_06896 N
THITE_2113700 Thielavia terrestris THITE_2113700 N
TRIATDRAFT_128029 Trichoderma atroviride TRIATDRAFT_128029 N
TRIREDRAFT_63532 Trichoderma reesei TRIREDRAFT_63532 N
TRIVIDRAFT_55751 Trichoderma virens TRIVIDRAFT_55751 N
UV8b_4997 Ustilaginoidea virens UV8b_4997 N
VDAG_03306 Verticillium dahliae VDAG_03306 N
VHEMI06414 Torrubiella hemipterigena VHEMI06414 N
X797_003693 Metarhizium robertsii X797_003693 N