CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bo7g077410 *(Brassica oleracea)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	Bo7g077410	T000895_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.862	0.941
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.862	0.941
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.862	0.941
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.811	0.824
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.804	0.824
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.788	0.784
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.788	0.784
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.787	0.804
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.787	0.804
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.787	0.804
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.747	0.745
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.730	0.784
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.730	0.784
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.729	0.784
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.725	0.745
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.720	0.745
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.720	0.745
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.720	0.745
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.716	0.686
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.714	0.686
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.710	0.686
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.703	0.647
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.700	0.745
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.700	0.745
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.693	0.745
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.693	0.745
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.693	0.745
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.682	0.686
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.681	0.686
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.681	0.686
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.679	0.686
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.679	0.686
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.678	0.588
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bo7g077410.1	AP2	165	217	RHYRGVRQRPWGKFASEIRDPNKRGSRIWLGTFDTAIEAARAYDEAAFRLRGS

Links
Other AP2 family TFs
Other *Brassica oleracea* TFs

1188 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Alligator_sinensis_CCG004678.1	Alligator sinensis	Alligator_sinensis_CCG004678.1	N
Cmyd_10017930	Chelonia mydas	Cmyd_10017930	N
ENSMGAG00000017003	Meleagris gallopavo	ENSMGAG00000017003	N
ENSMODG00000004916	Monodelphis domestica	ENSMODG00000004916	N
cers2a	Oryzias latipes	ENSORLG00000002602	N
ENSPMAG00000008848	Petromyzon marinus	ENSPMAG00000008848	N
ENSSHAG00000001540	Sarcophilus harrisii	ENSSHAG00000001540	N
ENSSHAG00000003870	Sarcophilus harrisii	ENSSHAG00000003870	N
Myotis_brandtii_Lass6_10034918	Myotis brandtii	Myotis_brandtii_Lass6_10034918	N

Bo7g077410 (Brassica oleracea) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1188 Related TFs

Bo7g077410 **(Brassica oleracea)
AP2**