Bra013978 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra013978 T001082_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q6SA75_TOBAC
M09733_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_01 		0.907 0.933
Q6SA75_TOBAC
M09734_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_02 		0.907 0.933
PLT1
M06622_2.00 		Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH		 Dap-seq
OMalley et al.(2016)
PLT1_col_a 		0.902 0.914
PLT1
M06623_2.00 		Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH		 Dap-seq
OMalley et al.(2016)
PLT1_colamp_a 		0.902 0.914
ANT
M02647_2.00 		Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH		 SELEX
Mathelier et al.(2014)
MA0571.1 		0.901 0.914
ANT
M09705_2.00 		Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG		 Transfac
Matys et al.(2006)
P$ANT_01 		0.901 0.914
AIL7
M06688_2.00 		Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG		 Dap-seq
OMalley et al.(2016)
AIL7_col_a 		0.851 0.886
AIL7
M06689_2.00 		Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH		 Dap-seq
OMalley et al.(2016)
AIL7_colamp_a 		0.851 0.886
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra013978.1-P AP2 209 269
Bra013978.1-P AP2 311 363

Links

Other AP2 family TFs
Other Brassica rapa TFs

606 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003881 Calypte anna Aan_R003881 I
Aan_R015320 Calypte anna Aan_R015320 I
Afo_R009175 Aptenodytes forsteri Afo_R009175 I
Alligator_sinensis_CCG006627.1 Alligator sinensis Alligator_sinensis_CCG006627.1 I
Brh_R007445 Buceros rhinoceros Brh_R007445 I
Cmyd_10020158 Chelonia mydas Cmyd_10020158 I
ENSAMEG00000006817 Ailuropoda melanoleuca ENSAMEG00000006817 I
ENSAMXG00000017702 Astyanax mexicanus ENSAMXG00000017702 I
ENSAMXG00000018599 Astyanax mexicanus ENSAMXG00000018599 I
ENSAPLG00000003356 Anas platyrhynchos ENSAPLG00000003356 I
SALL1 Bos taurus ENSBTAG00000008544 I
ENSBTAP00000011264-D1 Bos grunniens ENSBTAP00000011264-D1 I
SALL1 Canis familiaris ENSCAFG00000009755 I
SALL1 Callithrix jacchus ENSCJAG00000001740 I
ENSCSAG00000005319 Chlorocebus sabaeus ENSCSAG00000005319 I
sall1a Danio rerio ENSDARG00000074319 I
SALL1 Dasypus novemcinctus ENSDNOG00000016413 I
ENSDORG00000004249 Dipodomys ordii ENSDORG00000004249 I
SALL1 Equus caballus ENSECAG00000011334 I
SALL1 Erinaceus europaeus ENSEEUG00000002014 I
SALL3 Echinops telfairi ENSETEG00000001481 I
SALL1 Echinops telfairi ENSETEG00000015150 I
ENSFALG00000000074 Ficedula albicollis ENSFALG00000000074 I
SALL1 Homo sapiens ENSG00000103449 I
ENSGALG00000003739 Gallus gallus ENSGALG00000003739 I
SALL1 Gorilla gorilla ENSGGOG00000000663 I
ENSGMOG00000006103 Gadus morhua ENSGMOG00000006103 I
ENSLACG00000003556 Latimeria chalumnae ENSLACG00000003556 I
SALL1 Loxodonta africana ENSLAFG00000015251 I
ENSMEUG00000012206 Macropus eugenii ENSMEUG00000012206 I
SALL1 Meleagris gallopavo ENSMGAG00000004704 I
SALL1 Myotis lucifugus ENSMLUG00000015541 I
SALL1 Monodelphis domestica ENSMODG00000013114 I
ENSMPUG00000003265 Mustela putorius furo ENSMPUG00000003265 I
Sall1 Mus musculus ENSMUSG00000031665 D
SALL1 Oryctolagus cuniculus ENSOCUG00000004364 I
ENSP00000251020 Macaca fascicularis ENSP00000251020 I
SALL1 Procavia capensis ENSPCAG00000008162 I
ENSPPYG00000007345 Pongo abelii ENSPPYG00000007345 I
ENSPSIG00000008582 Pelodiscus sinensis ENSPSIG00000008582 I
SALL1 Pan troglodytes ENSPTRG00000008108 I
SALL1 Sorex araneus ENSSARG00000000661 I
ENSSHAG00000009477 Sarcophilus harrisii ENSSHAG00000009477 I
SALL1 Sus scrofa ENSSSCG00000002836 I
ENSSTOG00000020885 Ictidomys tridecemlineatus ENSSTOG00000020885 I
SALL1 Taeniopygia guttata ENSTGUG00000007514 I
Gfo_R010713 Geospiza fortis Gfo_R010713 I
Pvit_15502 Pogona vitticeps Pvit_15502 I
Tal_R006196 Tyto alba Tal_R006196 I
sall3.L Xenopus laevis XB-GENE-866033 I