CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OS03G0183000 *(Oryza sativa)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	OS03G0183000	T004155_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.774	0.837
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.769	0.796
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.769	0.796
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.751	0.755
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.751	0.755
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.750	0.816
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.741	0.776
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.741	0.776
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.733	0.755
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.733	0.755
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.733	0.755
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.732	0.735
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.732	0.755
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.732	0.755
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.728	0.796
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.726	0.735
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.726	0.735
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.726	0.735
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.723	0.816
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.723	0.816
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.721	0.714
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.716	0.673
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.715	0.735
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.715	0.673
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.715	0.673
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.713	0.673
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.713	0.673
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.713	0.735
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.713	0.735
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.708	0.694
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.708	0.735
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.708	0.735
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.699	0.694
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.699	0.694
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.699	0.694
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.695	0.714
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.695	0.714
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.695	0.714
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.695	0.714
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.690	0.714
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.689	0.714
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.689	0.714
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.689	0.714
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.687	0.694
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.686	0.653
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.686	0.653
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.683	0.673
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.682	0.714
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.681	0.673
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.681	0.673
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.681	0.673
PK17878.1 M01099_2.00	Cannabis sativa	CGCCGYCR	YGRCGGCG	PBM Lambert et al.(2019) pTH10133	0.680	0.653
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.679	0.714
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OS03T0183000-01	AP2	109	160	RHFRGIRQRPWGKWAAEIRDPHKGTRVWLGTFNTPEEAARAYDVEARRLRGS
OS03T0183000-02	AP2	109	160	RHFRGIRQRPWGKWAAEIRDPHKGTRVWLGTFNTPEEAARAYDVEARRLRGS

Links
Other AP2 family TFs
Other *Oryza sativa* TFs

1540 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BGIOSGA000583	Oryza indica	BGIOSGA000583	N
BGIOSGA004704	Oryza indica	BGIOSGA004704	I
BGIOSGA012523	Oryza indica	BGIOSGA012523	N
BGIOSGA012525	Oryza indica	BGIOSGA012525	N
BGIOSGA036760	Oryza indica	BGIOSGA036760	N
BRADI1G63910	Brachypodium distachyon	BRADI1G63910	N
BRADI2G22230	Brachypodium distachyon	BRADI2G22230	I
BRADI2G53500	Brachypodium distachyon	BRADI2G53500	N
BRADI2G53510	Brachypodium distachyon	BRADI2G53510	I
Ciclev10033384m.g	Citrus clementina	Ciclev10033384m.g	I
F775_02926	Aegilops tauschii	F775_02926	N
F775_03183	Aegilops tauschii	F775_03183	N
F775_04954	Aegilops tauschii	F775_04954	N
F775_23296	Aegilops tauschii	F775_23296	N
F775_31089	Aegilops tauschii	F775_31089	N
F775_31341	Aegilops tauschii	F775_31341	I
gene21364-v1.0-hybrid	Fragaria vesca	gene21364-v1.0-hybrid	I
GRMZM2G005207	Zea mays	GRMZM2G005207	I
GRMZM2G029282	Zea mays	GRMZM2G029282	N
GRMZM2G030272	Zea mays	GRMZM2G030272	N
GSMUA_Achr9G04830_001	Musa acuminata	GSMUA_Achr9G04830_001	I
LPERR01G30490	Leersia perrieri	LPERR01G30490	I
LPERR03G13630	Leersia perrieri	LPERR03G13630	N
LPERR10G04210	Leersia perrieri	LPERR10G04210	I
MDP0000460139	Malus domestica	MDP0000460139	I
MDP0000828055	Malus domestica	MDP0000828055	I
MLOC_34506	Hordeum vulgare	MLOC_34506	N
MLOC_3853	Hordeum vulgare	MLOC_3853	N
MLOC_57764	Hordeum vulgare	MLOC_57764	N
OB01G44150	Oryza brachyantha	OB01G44150	I
OB03G25300	Oryza brachyantha	OB03G25300	N
OBART01G35350	Oryza barthii	OBART01G35350	I
OBART01G35360	Oryza barthii	OBART01G35360	N
OBART03G15470	Oryza barthii	OBART03G15470	N
OBART05G20320	Oryza barthii	OBART05G20320	N
OBART12G00800	Oryza barthii	OBART12G00800	N
OGLUM01G39380	Oryza glumaepatula	OGLUM01G39380	N
OGLUM03G15660	Oryza glumaepatula	OGLUM03G15660	N
OGLUM05G21430	Oryza glumaepatula	OGLUM05G21430	N
OGLUM12G01320	Oryza glumaepatula	OGLUM12G01320	N
OLONG_001744	Oryza longistaminata	OLONG_001744	N
OLONG_028722	Oryza longistaminata	OLONG_028722	N
OMERI01G32480	Oryza meridionalis	OMERI01G32480	I
OMERI01G32490	Oryza meridionalis	OMERI01G32490	I
OMERI01G32500	Oryza meridionalis	OMERI01G32500	N
OMERI12G00120	Oryza meridionalis	OMERI12G00120	N
ONIVA01G40370	Oryza nivara	ONIVA01G40370	I
ONIVA01G40380	Oryza nivara	ONIVA01G40380	N
ONIVA03G16490	Oryza nivara	ONIVA03G16490	N
ONIVA05G21450	Oryza nivara	ONIVA05G21450	N
ONIVA12G00800	Oryza nivara	ONIVA12G00800	N
OPUNC01G34270	Oryza punctata	OPUNC01G34270	N
OPUNC01G34280	Oryza punctata	OPUNC01G34280	I
OPUNC01G34290	Oryza punctata	OPUNC01G34290	N
OPUNC03G15030	Oryza punctata	OPUNC03G15030	N
orange1.1g018407m.g	Citrus sinensis	orange1.1g018407m.g	I
ORGLA01G0291900	Oryza glaberrima	ORGLA01G0291900	I
ORGLA01G0292000	Oryza glaberrima	ORGLA01G0292000	N
ORGLA03G0148400	Oryza glaberrima	ORGLA03G0148400	N
ORGLA05G0177300	Oryza glaberrima	ORGLA05G0177300	N
ORGLA12G0007100	Oryza glaberrima	ORGLA12G0007100	N
ORUFI01G38670	Oryza rufipogon	ORUFI01G38670	I
ORUFI01G38680	Oryza rufipogon	ORUFI01G38680	N
ORUFI03G16080	Oryza rufipogon	ORUFI03G16080	N
ORUFI12G01140	Oryza rufipogon	ORUFI12G01140	N
OS03G0321700	Oryza sativa	OS03G0321700	N
Pavir.Ca00085	Panicum virgatum	Pavir.Ca00085	N
Pavir.Ea03256	Panicum virgatum	Pavir.Ea03256	N
Pavir.Ib01500	Panicum virgatum	Pavir.Ib01500	N
Pavir.J20374	Panicum virgatum	Pavir.J20374	N
PDK_20s1519811g001	Phoenix dactylifera	PDK_20s1519811g001	I
Sb01g036870	Sorghum bicolor	Sb01g036870	N
Sb03g038190	Sorghum bicolor	Sb03g038190	N
Sb08g002520	Sorghum bicolor	Sb08g002520	I
Si010813m.g	Setaria italica	Si010813m.g	N
Si039519m.g	Setaria italica	Si039519m.g	N
TRAES3BF081400030CFD_g	Triticum aestivum	TRAES3BF081400030CFD_g	I
Traes_1AL_309623B48	Triticum aestivum	Traes_1AL_309623B48	N
Traes_1AL_B24F28600	Triticum aestivum	Traes_1AL_B24F28600	I
Traes_1BL_46340D685	Triticum aestivum	Traes_1BL_46340D685	N
Traes_1BL_B4AFDB663	Triticum aestivum	Traes_1BL_B4AFDB663	I
Traes_1DL_DFE1721E0	Triticum aestivum	Traes_1DL_DFE1721E0	N
Traes_4AS_70DF607CC	Triticum aestivum	Traes_4AS_70DF607CC	N
Traes_4BL_A8C6FBEB6	Triticum aestivum	Traes_4BL_A8C6FBEB6	N
Traes_4DL_3140A8240	Triticum aestivum	Traes_4DL_3140A8240	N
TRIUR3_06231	Triticum urartu	TRIUR3_06231	N
TRIUR3_16097	Triticum urartu	TRIUR3_16097	N
TRIUR3_22129	Triticum urartu	TRIUR3_22129	N
TRIUR3_34396	Triticum urartu	TRIUR3_34396	I

OS03G0183000 (Oryza sativa) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1540 Related TFs

OS03G0183000 **(Oryza sativa)
AP2**