CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Sb06g024380 *(Sorghum bicolor)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	Sb06g024380	T005021_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.824	0.808
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.824	0.808
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.824	0.808
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.810	0.769
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.803	0.769
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.767	0.731
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.767	0.731
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.763	0.731
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.763	0.731
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.763	0.731
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.759	0.750
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.757	0.712
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.735	0.731
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.735	0.750
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.729	0.712
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.729	0.712
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.729	0.712
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.728	0.769
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.728	0.769
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.728	0.712
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.722	0.673
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.721	0.635
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.720	0.712
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.720	0.712
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.715	0.712
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.715	0.712
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.713	0.635
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.707	0.673
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.707	0.635
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.707	0.673
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.697	0.692
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.697	0.692
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.697	0.692
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.692	0.635
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.692	0.654
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.692	0.654
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.686	0.635
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.686	0.635
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.686	0.635
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.684	0.692
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.682	0.635
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.680	0.635
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.678	0.654
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.678	0.654
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.678	0.654
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.678	0.654
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.678	0.654
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Sb06g024380.1	AP2	137	189	RKYRGVRQRPWGKYAAEIRDPKRRGSRVWLGTYDTPIEAARAYDRAAFRMRGA

Links
Other AP2 family TFs
Other *Sorghum bicolor* TFs

1524 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aan_R007210	Calypte anna	Aan_R007210	N
Afo_R001308	Aptenodytes forsteri	Afo_R001308	N
Cmyd_10005399	Chelonia mydas	Cmyd_10005399	N
PRDM10	Anolis carolinensis	ENSACAG00000017654	N
ENSAMEG00000002425	Ailuropoda melanoleuca	ENSAMEG00000002425	N
ENSAPLG00000004858	Anas platyrhynchos	ENSAPLG00000004858	N
PRDM10	Bos taurus	ENSBTAG00000019001	N
ENSBTAP00000025295-D1	Bos grunniens	ENSBTAP00000025295-D1	N
PRDM10	Canis familiaris	ENSCAFG00000010164	N
PRDM10	Choloepus hoffmanni	ENSCHOG00000002494	N
PRDM10	Callithrix jacchus	ENSCJAG00000009235	N
ENSCSAG00000002202	Chlorocebus sabaeus	ENSCSAG00000002202	N
PRDM10	Dasypus novemcinctus	ENSDNOG00000001366	N
PRDM10	Equus caballus	ENSECAG00000011499	N
PRDM10	Erinaceus europaeus	ENSEEUG00000013526	N
ENSFALG00000004873	Ficedula albicollis	ENSFALG00000004873	N
PRDM10	Felis catus	ENSFCAG00000004111	N
PRDM10	Homo sapiens	ENSG00000170325	N
ENSGALG00000001278	Gallus gallus	ENSGALG00000001278	N
PRDM10	Gorilla gorilla	ENSGGOG00000015359	N
PRDM10	Meleagris gallopavo	ENSMGAG00000001112	N
PRDM10	Myotis lucifugus	ENSMLUG00000013051	N
PRDM10	Macaca mulatta	ENSMMUG00000017555	N
PRDM10	Monodelphis domestica	ENSMODG00000004979	N
ENSMPUG00000008711	Mustela putorius furo	ENSMPUG00000008711	N
ENSNLEG00000007488	Nomascus leucogenys	ENSNLEG00000007488	N
ENSOANG00000000577	Ornithorhynchus anatinus	ENSOANG00000000577	N
ENSOARG00000014507	Ovis aries	ENSOARG00000014507	N
PRDM10	Otolemur garnettii	ENSOGAG00000010723	N
ENSPANG00000017470	Papio anubis	ENSPANG00000017470	N
ENSPPYG00000004061	Pongo abelii	ENSPPYG00000004061	N
ENSPSIG00000009207	Pelodiscus sinensis	ENSPSIG00000009207	N
ENSPTRG00000004477	Pan troglodytes	ENSPTRG00000004477	N
PRDM10	Pteropus vampyrus	ENSPVAG00000012764	N
Prdm10	Rattus norvegicus	ENSRNOG00000007853	N
ENSSHAG00000004503	Sarcophilus harrisii	ENSSHAG00000004503	N
PRDM10	Sus scrofa	ENSSSCG00000015243	N
PRDM10	Taeniopygia guttata	ENSTGUG00000000530	N
ENSTSYG00000000544	Tarsius syrichta	ENSTSYG00000000544	N
PRDM10	Tursiops truncatus	ENSTTRG00000009189	N
Gfo_R003002	Geospiza fortis	Gfo_R003002	N
Ogr16136	Ophisaurus gracilis	Ogr16136	N
Pvit_19202	Pogona vitticeps	Pvit_19202	N
Tal_R010066	Tyto alba	Tal_R010066	N

Sb06g024380 (Sorghum bicolor) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1524 Related TFs

Sb06g024380 **(Sorghum bicolor)
AP2**