scaffold_802838.1 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 scaffold_802838.1 T005120_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.806 0.960
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.806 0.960
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.791 0.920
RAP2-6
M00717_2.00 		Arabidopsis thaliana
NBGCYGNH
DNCRGCVN		 PBM
Chang et al.(2013)
pTH7225 		0.751 0.820
RAP2-6
M00841_2.00 		Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.6 		0.751 0.820
RAP2-6
M06579_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
RAP26_col_a 		0.751 0.820
RAP2-6
M06580_2.00 		Arabidopsis thaliana
CGCCGY
RCGGCG		 Dap-seq
OMalley et al.(2016)
RAP26_colamp_a 		0.751 0.820
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.737 0.820
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.737 0.820
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.737 0.820
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.728 0.780
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.720 0.760
ABR1
M01051_2.00 		Arabidopsis thaliana
NYGSCGSCVNN
NNBGSCGSCRN		 PBM
Sullivan et al.(2014)
pTH7383 		0.716 0.780
ABR1
M06684_2.00 		Arabidopsis thaliana
CKCCGCCGYMDHHNYHNHH
DDNDRNDDHKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ABR1_col_a 		0.716 0.780
ABR1
M06685_2.00 		Arabidopsis thaliana
HNNHDSCGCCGCMAWHNNNNN
NNNNNDWTKGCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
ABR1_colamp_a 		0.716 0.780
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.710 0.780
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.710 0.780
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.709 0.780
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.706 0.720
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.704 0.780
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.704 0.780
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.704 0.780
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.699 0.740
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.699 0.740
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.699 0.740
PK02330.1
M01095_2.00 		Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN		 PBM
Lambert et al.(2019)
pTH10093 		0.693 0.740
A5JTT1_WHEAT
M09700_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_01 		0.692 0.720
ERF5_TOBAC
M09729_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF4_02 		0.681 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_802838.1 AP2 84 135

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

737 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_073460 Acremonium chrysogenum ACRE_073460 I
AUEXF2481DRAFT_273261 Aureobasidium subglaciale AUEXF2481DRAFT_273261 I
BAUCODRAFT_29233 Baudoinia compniacensis BAUCODRAFT_29233 I
BBA_01180 Beauveria bassiana BBA_01180 I
Bcin11g02190 Botrytis cinerea Bcin11g02190 I
BGHDH14_bgh05591 Blumeria graminis BGHDH14_bgh05591 I
CFIO01_10925 Colletotrichum fioriniae CFIO01_10925 I
CGGC5_1994 Colletotrichum gloeosporioides CGGC5_1994 I
CH063_15703 Colletotrichum higginsianum CH063_15703 I
CHGG_00810 Chaetomium globosum CHGG_00810 I
CMQ_8059 Grosmannia clavigera CMQ_8059 I
Cob_01690 Colletotrichum orbiculare Cob_01690 I
COCSADRAFT_233623 Bipolaris sorokiniana COCSADRAFT_233623 I
CPUR_08856 Claviceps purpurea CPUR_08856 I
CSUB01_02350 Colletotrichum sublineola CSUB01_02350 I
CTHT_0059940 Chaetomium thermophilum CTHT_0059940 I
DOTSEDRAFT_68446 Dothistroma septosporum DOTSEDRAFT_68446 I
estExt_fgenesh1_pg.C_10183 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_10183 I
estExt_fgenesh2_pg.C_70450 Neurospora discreta estExt_fgenesh2_pg.C_70450 I
EV44_g4453 Erysiphe necator EV44_g4453 I
F503_02324 Ophiostoma piceae uamh F503_02324 I
FFUJ_02750 Fusarium fujikuroi FFUJ_02750 I
fgenesh1_pm.sca_3_chr4_2_0000293 Nectria haematococca fgenesh1_pm.sca_3_chr4_2_0000293 I
FGRRES_16777 Fusarium graminearum FGRRES_16777 I
FOXG_01706 Fusarium oxysporum FOXG_01706 I
FPSE_02684 Fusarium pseudograminearum FPSE_02684 I
FVEG_08072 Fusarium verticillioides FVEG_08072 I
GGTG_10172 Gaeumannomyces graminis GGTG_10172 I
GLRG_03912 Colletotrichum graminicola GLRG_03912 I
GMDG_04263 Pseudogymnoascus destructans GMDG_04263 I
HMPREF1624_05238 Sporothrix schenckii HMPREF1624_05238 I
LEMA_P054670.1 Leptosphaeria maculans LEMA_P054670.1 I
M437DRAFT_64191 Aureobasidium melanogenum M437DRAFT_64191 I
M438DRAFT_355299 Aureobasidium pullulans M438DRAFT_355299 I
MAC_06175 Metarhizium acridum MAC_06175 I
MAJ_00965 Metarhizium majus MAJ_00965 I
MAM_05700 Metarhizium album MAM_05700 I
MANI_001888 Metarhizium anisopliae MANI_001888 I
MAPG_03141 Magnaporthe poae MAPG_03141 I
MBM_05757 Marssonina brunnea MBM_05757 I
MBR_03139 Metarhizium brunneum MBR_03139 I
MGG_00184 Magnaporthe oryzae MGG_00184 I
MGU_03055 Metarhizium guizhouense MGU_03055 I
MPH_03255 Macrophomina phaseolina MPH_03255 I
MYCTH_2296328 Myceliophthora thermophila MYCTH_2296328 I
NCU03070 Neurospora crassa NCU03070 D
NechaG92678 Fusarium solani NechaG92678 I
NEUTE1DRAFT_91411 Neurospora tetrasperma NEUTE1DRAFT_91411 I
OCS_05859 Ophiocordyceps sinensis OCS_05859 I
OIDMADRAFT_196475 Oidiodendron maius OIDMADRAFT_196475 I
PFICI_01477 Pestalotiopsis fici PFICI_01477 I
PODANS_1_12070 Podospora anserina PODANS_1_12070 I
PV09_02505 Verruconis gallopava PV09_02505 I
S40285_05687 Stachybotrys chlorohalonata S40285_05687 I
S40288_04931 Stachybotrys chartarum S40288_04931 I
SAPIO_CDS3676 Scedosporium apiospermum SAPIO_CDS3676 I
SBOR_9020 Sclerotinia borealis SBOR_9020 I
SETTUDRAFT_122108 Setosphaeria turcica SETTUDRAFT_122108 I
SMAC_02800 Sordaria macrospora SMAC_02800 I
SPBR_04777 Sporothrix brasiliensis SPBR_04777 I
SS1G_01567 Sclerotinia sclerotiorum SS1G_01567 I
THITE_2113433 Thielavia terrestris THITE_2113433 I
TRIATDRAFT_164928 Trichoderma atroviride TRIATDRAFT_164928 I
TRIVIDRAFT_87030 Trichoderma virens TRIVIDRAFT_87030 I
UCRNP2_1205 Neofusicoccum parvum UCRNP2_1205 I
UV8b_4370 Ustilaginoidea virens UV8b_4370 I
V499_07400 Pseudogymnoascus pannorum V499_07400 I
VDAG_08786 Verticillium dahliae VDAG_08786 I
VHEMI10600 Torrubiella hemipterigena VHEMI10600 I
W97_00691 Coniosporium apollinis W97_00691 I
X797_004249 Metarhizium robertsii X797_004249 I