VIT_19s0090g01080 (Vitis vinifera)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 VIT_19s0090g01080 T006144_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF3
M01607_2.00 		Arabidopsis thaliana
CGCCGSCR
YGSCGGCG		 PBM
Weirauch et al.(2014)
pTH8109 		0.778 0.894
ERF3
M06584_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
ERF3_col_a 		0.778 0.894
ERF3
M06585_2.00 		Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR
YGRCGGCGGHRNNDNHDDNN		 Dap-seq
OMalley et al.(2016)
ERF3_colamp_a 		0.778 0.894
PK17878.1
M01099_2.00 		Cannabis sativa
CGCCGYCR
YGRCGGCG		 PBM
Lambert et al.(2019)
pTH10133 		0.743 0.830
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.708 0.787
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.708 0.787
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.708 0.787
OS05G0497200
M01636_2.00 		Oryza sativa
CGSCGCCR
YGGCGSCG		 PBM
Weirauch et al.(2014)
pTH8640 		0.698 0.766
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.692 0.745
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.692 0.745
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.689 0.745
ERF7
M01617_2.00 		Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN		 PBM
Weirauch et al.(2014)
pTH7606 		0.687 0.809
ERF7
M06620_2.00 		Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR		 Dap-seq
OMalley et al.(2016)
ERF7_col_a 		0.687 0.809
ERF7
M06621_2.00 		Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN		 Dap-seq
OMalley et al.(2016)
ERF7_colamp_a 		0.687 0.809
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.684 0.745
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.684 0.745
ERF8
M01608_2.00 		Arabidopsis thaliana
MGCCGNMNNN
NNNKNCGGCK		 PBM
Weirauch et al.(2014)
pTH8095 		0.678 0.766
ERF8
M06586_2.00 		Arabidopsis thaliana
NYHDYCKCCGCCGYH
DRCGGCGGMGRHDRN		 Dap-seq
OMalley et al.(2016)
ERF8_col_a 		0.678 0.766
ERF8
M06587_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYCRHHDN
NHDDYGRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
ERF8_colamp_a 		0.678 0.766
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_19s0090g01080.t01 AP2 63 114

Links

Other AP2 family TFs
Other Vitis vinifera TFs

390 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29933.m001439 Ricinus communis 29933.m001439 N
30027.m000837 Ricinus communis 30027.m000837 N
Ca_06925 Cicer arietinum Ca_06925 N
Ca_16645 Cicer arietinum Ca_16645 N
evm.TU.supercontig_1993.2 Carica papaya evm.TU.supercontig_1993.2 N
evm.TU.supercontig_43.122 Carica papaya evm.TU.supercontig_43.122 N
e_gw1.1.456.1 Physcomitrella patens e_gw1.1.456.1 N
e_gw1.389.24.1 Physcomitrella patens e_gw1.389.24.1 N
GLYMA05G17994 Glycine max GLYMA05G17994 N
GRMZM2G111045 Zea mays GRMZM2G111045 I
Lus10030442.g Linum usitatissimum Lus10030442.g N
mgf004018m Mimulus guttatus mgf004018m N
MLOC_16981 Hordeum vulgare MLOC_16981 I
MLOC_18177 Hordeum vulgare MLOC_18177 I
ORUFI06G25490 Oryza rufipogon ORUFI06G25490 N
OS08G0433400 Oryza sativa OS08G0433400 N
PDK_20s1698071g001 Phoenix dactylifera PDK_20s1698071g001 N
POPTR_0002s15900 Populus trichocarpa POPTR_0002s15900 N
SELMODRAFT_39496 Selaginella moellendorffii SELMODRAFT_39496 N
SELMODRAFT_39499 Selaginella moellendorffii SELMODRAFT_39499 N
SELMODRAFT_78303 Selaginella moellendorffii SELMODRAFT_78303 N
SELMODRAFT_78848 Selaginella moellendorffii SELMODRAFT_78848 N
SELMODRAFT_84608 Selaginella moellendorffii SELMODRAFT_84608 N
SELMODRAFT_89380 Selaginella moellendorffii SELMODRAFT_89380 N
SELMODRAFT_90153 Selaginella moellendorffii SELMODRAFT_90153 N
Traes_2BL_216652F6B Triticum aestivum Traes_2BL_216652F6B N
TRIUR3_30803 Triticum urartu TRIUR3_30803 N