cassava19475.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava19475.valid.m1 T006830_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.780 0.918
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.729 0.857
Q1ESI9_MAIZE
M09714_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB2A_02 		0.699 0.816
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.698 0.776
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.694 0.796
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.694 0.796
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.694 0.796
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.677 0.816
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.677 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava19475.valid.m1 AP2 80 131

Links

Other AP2 family TFs
Other Manihot esculenta TFs

181 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Brh_R010409 Buceros rhinoceros Brh_R010409 I
Cmyd_10020724 Chelonia mydas Cmyd_10020724 I
THAP12 Anolis carolinensis ENSACAG00000017074 I
ENSAMEG00000002077 Ailuropoda melanoleuca ENSAMEG00000002077 I
ENSAMXG00000002922 Astyanax mexicanus ENSAMXG00000002922 I
ENSAPLG00000010379 Anas platyrhynchos ENSAPLG00000010379 I
THAP12 Bos taurus ENSBTAG00000031609 I
ENSCHOG00000005539 Choloepus hoffmanni ENSCHOG00000005539 I
ENSCHOG00000007628 Choloepus hoffmanni ENSCHOG00000007628 I
ENSCHOG00000009417 Choloepus hoffmanni ENSCHOG00000009417 I
ENSCJAG00000012300 Callithrix jacchus ENSCJAG00000012300 I
prkrirb Danio rerio ENSDARG00000020964 D
ENSDNOG00000000774 Dasypus novemcinctus ENSDNOG00000000774 I
THAP12 Equus caballus ENSECAG00000021982 I
THAP12 Erinaceus europaeus ENSEEUG00000003060 I
THAP12 Felis catus ENSFCAG00000006764 I
prkrirb Gasterosteus aculeatus ENSGACG00000010435 I
THAP12 Gallus gallus ENSGALG00000000838 D
ENSGGOG00000023767 Gorilla gorilla ENSGGOG00000023767 I
ENSGGOG00000026052 Gorilla gorilla ENSGGOG00000026052 I
ENSGMOG00000010245 Gadus morhua ENSGMOG00000010245 I
ENSLOCG00000004788 Lepisosteus oculatus ENSLOCG00000004788 I
ENSMEUG00000011765 Macropus eugenii ENSMEUG00000011765 I
THAP12 Meleagris gallopavo ENSMGAG00000015267 I
ENSMLUG00000000564 Myotis lucifugus ENSMLUG00000000564 I
ENSMMUG00000013164 Macaca mulatta ENSMMUG00000013164 I
ENSMMUG00000022399 Macaca mulatta ENSMMUG00000022399 I
ENSMMUP00000040972 Macaca fascicularis ENSMMUP00000040972 I
THAP12 Monodelphis domestica ENSMODG00000005315 I
ENSNLEG00000005175 Nomascus leucogenys ENSNLEG00000005175 I
THAP12 Ornithorhynchus anatinus ENSOANG00000000831 I
ENSOARG00000012702 Ovis aries ENSOARG00000012702 I
ENSOGAG00000024748 Otolemur garnettii ENSOGAG00000024748 N
ENSONIG00000011168 Oreochromis niloticus ENSONIG00000011168 I
prkrirb Oryzias latipes ENSORLG00000005427 D
ENSP00000260045 Macaca fascicularis ENSP00000260045 I
ENSP00000260045-D1 Bos grunniens ENSP00000260045-D1 I
ENSPCAG00000008407 Procavia capensis ENSPCAG00000008407 I
ENSPFOG00000009414 Poecilia formosa ENSPFOG00000009414 I
THAP12 Pan troglodytes ENSPTRG00000004091 I
THAP12 Taeniopygia guttata ENSTGUG00000013565 I
prkrirb Tetraodon nigroviridis ENSTNIG00000003292 D
prkrirb Takifugu rubripes ENSTRUG00000007070 I
ENSTSYG00000000689 Tarsius syrichta ENSTSYG00000000689 I
ENSTSYG00000001778 Tarsius syrichta ENSTSYG00000001778 I
ENSTTRG00000012793 Tursiops truncatus ENSTTRG00000012793 I
THAP12 Tursiops truncatus ENSTTRG00000013287 I
ENSXMAG00000001706 Xiphophorus maculatus ENSXMAG00000001706 I
Gfo_R003337 Geospiza fortis Gfo_R003337 I
Pvit_02386 Pogona vitticeps Pvit_02386 I
Tal_R010930 Tyto alba Tal_R010930 I
thap12 Xenopus tropicalis XB-GENE-6073216 I