cassava2757.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava2757.m1 T006870_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PLT1
M06622_2.00 		Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH		 Dap-seq
OMalley et al.(2016)
PLT1_col_a 		0.872 0.856
PLT1
M06623_2.00 		Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH		 Dap-seq
OMalley et al.(2016)
PLT1_colamp_a 		0.872 0.856
Q6SA75_TOBAC
M09733_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_01 		0.868 0.865
Q6SA75_TOBAC
M09734_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_02 		0.868 0.865
ANT
M02647_2.00 		Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH		 SELEX
Mathelier et al.(2014)
MA0571.1 		0.866 0.865
ANT
M09705_2.00 		Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG		 Transfac
Matys et al.(2006)
P$ANT_01 		0.866 0.865
AIL7
M06688_2.00 		Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG		 Dap-seq
OMalley et al.(2016)
AIL7_col_a 		0.819 0.837
AIL7
M06689_2.00 		Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH		 Dap-seq
OMalley et al.(2016)
AIL7_colamp_a 		0.819 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava2757.m1 AP2 255 312
cassava2757.m1 AP2 354 406

Links

Other AP2 family TFs
Other Manihot esculenta TFs

526 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30003.m000320 Ricinus communis 30003.m000320 I
AC233935.1_FG005 Zea mays AC233935.1_FG005 I
Aquca_003_00022 Aquilegia coerulea Aquca_003_00022 I
Aquca_027_00331 Aquilegia coerulea Aquca_027_00331 I
DOF2.4 Arabidopsis thaliana AT2G37590 D
BGIOSGA011007 Oryza indica BGIOSGA011007 I
BGIOSGA013837 Oryza indica BGIOSGA013837 I
Bo3g031830 Brassica oleracea Bo3g031830 I
Bo4g030400 Brassica oleracea Bo4g030400 I
Bo4g116790 Brassica oleracea Bo4g116790 I
Bo4g187060 Brassica oleracea Bo4g187060 I
Bo8g089670 Brassica oleracea Bo8g089670 I
Bostr.23794s0318 Boechera stricta Bostr.23794s0318 I
Bra005181 Brassica rapa Bra005181 I
Bra007156 Brassica rapa Bra007156 I
Bra014752 Brassica rapa Bra014752 I
Bra017171 Brassica rapa Bra017171 I
BRADI1G03710 Brachypodium distachyon BRADI1G03710 I
Cagra.25389s0001 Capsella grandiflora Cagra.25389s0001 I
Carubv10023657m.g Capsella rubella Carubv10023657m.g I
cassava13791.valid.m1 Manihot esculenta cassava13791.valid.m1 I
cassava37755.valid.m1 Manihot esculenta cassava37755.valid.m1 I
cassava40772.m1 Manihot esculenta cassava40772.m1 I
cassava44577.m1 Manihot esculenta cassava44577.m1 I
cassava9338.m1 Manihot esculenta cassava9338.m1 I
Ca_16690 Cicer arietinum Ca_16690 I
Ca_23246 Cicer arietinum Ca_23246 I
Ciclev10012024m.g Citrus clementina Ciclev10012024m.g I
Ciclev10028829m.g Citrus clementina Ciclev10028829m.g I
Ciclev10032039m.g Citrus clementina Ciclev10032039m.g I
Cla004078 Citrullus lanatus Cla004078 I
Cla008384 Citrullus lanatus Cla008384 I
Cla013505 Citrullus lanatus Cla013505 I
Cla018166 Citrullus lanatus Cla018166 I
Cla018499 Citrullus lanatus Cla018499 I
Cucsa.066100 Cucumis sativus Cucsa.066100 I
Cucsa.165340 Cucumis sativus Cucsa.165340 I
Cucsa.175390 Cucumis sativus Cucsa.175390 I
Cucsa.213830 Cucumis sativus Cucsa.213830 I
Eucgr.A01258 Eucalyptus grandis Eucgr.A01258 I
Eucgr.K03144 Eucalyptus grandis Eucgr.K03144 I
evm.TU.supercontig_188.14 Carica papaya evm.TU.supercontig_188.14 I
evm.TU.supercontig_361.3 Carica papaya evm.TU.supercontig_361.3 I
OBP3 Arabidopsis lyrata fgenesh2_kg.5__1952__AT3G55370.2 I
gene14128-v1.0-hybrid Fragaria vesca gene14128-v1.0-hybrid I
gene18383-v1.0-hybrid Fragaria vesca gene18383-v1.0-hybrid I
gene26628-v1.0-hybrid Fragaria vesca gene26628-v1.0-hybrid I
GLYMA02G10250 Glycine max GLYMA02G10250 I
GLYMA08G47290 Glycine max GLYMA08G47290 I
GLYMA11G14920 Glycine max GLYMA11G14920 I
GLYMA12G06880 Glycine max GLYMA12G06880 I
GLYMA13G41031 Glycine max GLYMA13G41031 I
GLYMA15G04430 Glycine max GLYMA15G04430 I
GLYMA18G38560 Glycine max GLYMA18G38560 I
GLYMA18G52661 Glycine max GLYMA18G52661 I
Gorai.001G109300 Gossypium raimondii Gorai.001G109300 I
Gorai.003G133200 Gossypium raimondii Gorai.003G133200 I
Gorai.004G004800 Gossypium raimondii Gorai.004G004800 I
Gorai.006G173700 Gossypium raimondii Gorai.006G173700 I
Gorai.009G100100 Gossypium raimondii Gorai.009G100100 I
Gorai.009G319300 Gossypium raimondii Gorai.009G319300 I
Gorai.011G257300 Gossypium raimondii Gorai.011G257300 I
GRMZM2G017470 Zea mays GRMZM2G017470 I
GRMZM2G093725 Zea mays GRMZM2G093725 I
GRMZM2G144172 Zea mays GRMZM2G144172 I
GSMUA_Achr10G03660_001 Musa acuminata GSMUA_Achr10G03660_001 I
GSMUA_Achr11G24420_001 Musa acuminata GSMUA_Achr11G24420_001 I
GSMUA_Achr5G07150_001 Musa acuminata GSMUA_Achr5G07150_001 I
GSMUA_Achr5G28660_001 Musa acuminata GSMUA_Achr5G28660_001 I
GSMUA_Achr5G29110_001 Musa acuminata GSMUA_Achr5G29110_001 I
GSMUA_Achr6G34180_001 Musa acuminata GSMUA_Achr6G34180_001 I
GSMUA_Achr7G15150_001 Musa acuminata GSMUA_Achr7G15150_001 I
GSMUA_Achr9G03270_001 Musa acuminata GSMUA_Achr9G03270_001 I
LjSGA_027830.1 Lotus japonicus LjSGA_027830.1 I
LPERR03G33280 Leersia perrieri LPERR03G33280 I
LPERR07G06960 Leersia perrieri LPERR07G06960 I
Lus10005956.g Linum usitatissimum Lus10005956.g I
Lus10025340.g Linum usitatissimum Lus10025340.g I
Lus10029458.g Linum usitatissimum Lus10029458.g I
Lus10040305.g Linum usitatissimum Lus10040305.g I
MDP0000397984 Malus domestica MDP0000397984 I
MDP0000939744 Malus domestica MDP0000939744 I
mgf024276m Mimulus guttatus mgf024276m I
MTR_4g022370 Medicago truncatula MTR_4g022370 I
MTR_4g063780 Medicago truncatula MTR_4g063780 I
OGLUM03G38970 Oryza glumaepatula OGLUM03G38970 I
OMERI05G00970 Oryza meridionalis OMERI05G00970 I
ONIVA03G40780 Oryza nivara ONIVA03G40780 I
OPUNC03G36200 Oryza punctata OPUNC03G36200 I
orange1.1g017919m.g Citrus sinensis orange1.1g017919m.g I
orange1.1g019668m.g Citrus sinensis orange1.1g019668m.g I
orange1.1g020288m.g Citrus sinensis orange1.1g020288m.g I
OS03G0821200 Oryza sativa OS03G0821200 I
Pavir.Ia00290 Panicum virgatum Pavir.Ia00290 I
Pavir.J14743 Panicum virgatum Pavir.J14743 I
PGSC0003DMG400000441 Solanum tuberosum PGSC0003DMG400000441 I
PGSC0003DMG400019155 Solanum tuberosum PGSC0003DMG400019155 I
PGSC0003DMG400023426 Solanum tuberosum PGSC0003DMG400023426 I
PK00254.1 Cannabis sativa PK00254.1 I
PK03929.1 Cannabis sativa PK03929.1 D
Pm000862 Prunus mume Pm000862 I
Pm002726 Prunus mume Pm002726 I
Pm018788 Prunus mume Pm018788 I
POPTR_0001s24540 Populus trichocarpa POPTR_0001s24540 I
POPTR_0006s08440 Populus trichocarpa POPTR_0006s08440 I
POPTR_0009s03490 Populus trichocarpa POPTR_0009s03490 I
POPTR_0010s21240 Populus trichocarpa POPTR_0010s21240 I
PRUPE_ppa007513mg Prunus persica PRUPE_ppa007513mg I
PRUPE_ppa008407mg Prunus persica PRUPE_ppa008407mg I
PRUPE_ppa020232mg Prunus persica PRUPE_ppa020232mg I
SapurV1A.0001s1930 Salix purpurea SapurV1A.0001s1930 I
SapurV1A.0040s0200 Salix purpurea SapurV1A.0040s0200 I
SapurV1A.0095s0240 Salix purpurea SapurV1A.0095s0240 I
SapurV1A.1042s0040 Salix purpurea SapurV1A.1042s0040 I
Sb01g003210 Sorghum bicolor Sb01g003210 I
Sb01g039550 Sorghum bicolor Sb01g039550 I
ATDOF2.4 Arabidopsis lyrata scaffold_402404.1 I
Si035896m.g Setaria italica Si035896m.g I
Solyc10g086440.1 Solanum lycopersicum Solyc10g086440.1 I
Solyc11g066050.1 Solanum lycopersicum Solyc11g066050.1 I
TCM_021955 Theobroma cacao TCM_021955 I
TCM_041861 Theobroma cacao TCM_041861 I
TCM_042784 Theobroma cacao TCM_042784 I
Thhalv10016930m.g Eutrema salsugineum Thhalv10016930m.g I
VIT_06s0004g04520 Vitis vinifera VIT_06s0004g04520 I
VIT_08s0007g00180 Vitis vinifera VIT_08s0007g00180 I
VIT_13s0019g01410 Vitis vinifera VIT_13s0019g01410 I