Cagra.1822s0047 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.1822s0047 T007749_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF087
M06573_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYYD
HRRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
AT1G28160_col_a 		0.853 1.000
ERF087
M06574_2.00 		Arabidopsis thaliana
HDYCKCCGCCGYCR
YGRCGGCGGMGRHD		 Dap-seq
OMalley et al.(2016)
AT1G28160_colamp_a 		0.853 1.000
LEP
M06661_2.00 		Arabidopsis thaliana
NBCKCCGCCGYHDHHDYHNHH
DDNDRHDDHDRCGGCGGMGVN		 Dap-seq
OMalley et al.(2016)
LEP_col_a 		0.789 0.840
Q84J59_MAIZE
M09717_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BD1_01 		0.760 0.780
ERF086
M06663_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYHD
HDRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
PUCHI_col_a 		0.756 0.800
ERF086
M06664_2.00 		Arabidopsis thaliana
NNNNHDHCKCCGCCGYHDHHDHNNN
NNNDHDDHDRCGGCGGMGDHDNNNN		 Dap-seq
OMalley et al.(2016)
PUCHI_colamp_a 		0.756 0.800
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.698 0.740
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.698 0.740
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.698 0.740
ERF096
M01630_2.00 		Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN		 PBM
Weirauch et al.(2014)
pTH7909 		0.695 0.740
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.689 0.740
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.689 0.740
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.688 0.720
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.687 0.700
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.687 0.700
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1822s0047.1.p AP2 38 89

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

556 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_183343 Agaricus bisporus AGABI2DRAFT_183343 N
BN946_scf184798.g98 Trametes cinnabarina BN946_scf184798.g98 N
CY34DRAFT_801159 Suillus luteus CY34DRAFT_801159 N
fgenesh2_pg.C_scaffold_2000358 Heterobasidion annosum fgenesh2_pg.C_scaffold_2000358 N
GALMADRAFT_134896 Galerina marginata GALMADRAFT_134896 N
GLOTRDRAFT_120144 Gloeophyllum trabeum GLOTRDRAFT_120144 N
GYMLUDRAFT_83637 Gymnopus luxurians GYMLUDRAFT_83637 N
HETIRDRAFT_115131 Heterobasidion irregulare HETIRDRAFT_115131 N
HYDPIDRAFT_98320 Hydnomerulius pinastri HYDPIDRAFT_98320 N
JAAARDRAFT_204482 Jaapia argillacea JAAARDRAFT_204482 N
K443DRAFT_89219 Laccaria amethystina K443DRAFT_89219 N
L804_01011 Cryptococcus gattii L804_01011 N
LACBIDRAFT_293478 Laccaria bicolor LACBIDRAFT_293478 N
M378DRAFT_156828 Amanita muscaria M378DRAFT_156828 N
M404DRAFT_1008279 Pisolithus tinctorius M404DRAFT_1008279 N
M404DRAFT_992679 Pisolithus tinctorius M404DRAFT_992679 N
M413DRAFT_438457 Hebeloma cylindrosporum M413DRAFT_438457 N
MPER_06925 Moniliophthora perniciosa MPER_06925 N
PAXRUDRAFT_821444 Paxillus rubicundulus PAXRUDRAFT_821444 N
PHACADRAFT_209047 Phanerochaete carnosa PHACADRAFT_209047 N
PILCRDRAFT_329759 Piloderma croceum PILCRDRAFT_329759 N
PLEOSDRAFT_1073965 Pleurotus ostreatus PLEOSDRAFT_1073965 N
SCHCODRAFT_105299 Schizophyllum commune SCHCODRAFT_105299 N
SCLCIDRAFT_1219298 Scleroderma citrinum SCLCIDRAFT_1219298 N
SERLA73DRAFT_162028 Serpula lacrymans SERLA73DRAFT_162028 N
V565_085740 Rhizoctonia solani V565_085740 N