Cagra.5557s0006 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.5557s0006 T007794_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2E
M06609_2.00 		Arabidopsis thaliana
NNNHNHMACCGMCWTWD
HWAWGKCGGTKDNDNNN		 Dap-seq
OMalley et al.(2016)
DREB19_col_a 		0.821 0.962
DREB2E
M06610_2.00 		Arabidopsis thaliana
HNHMACCGACWTWD
HWAWGTCGGTKDND		 Dap-seq
OMalley et al.(2016)
DREB19_colamp_a 		0.821 0.962
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.5557s0006.1.p AP2 72 131

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALUE_0000320001 Ascaris lumbricoides ALUE_0000320001 N 0.000
ASIM_0001375501 Anisakis simplex ASIM_0001375501 N 0.000
ASU_09694 Ascaris suum ASU_09694 N 0.000
PEQ_0000470601 Parascaris equorum PEQ_0000470601 N 0.000