Ciclev10018044m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10018044m.g T008006_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.698 0.941
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.698 0.941
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10018044m AP2 30 81

Links

Other AP2 family TFs
Other Citrus clementina TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA022375 Oryza indica BGIOSGA022375 I
Bra010591 Brassica rapa Bra010591 I
Eucgr.I00906 Eucalyptus grandis Eucgr.I00906 I
GLYMA01G32890 Glycine max GLYMA01G32890 I
GLYMA02G00981 Glycine max GLYMA02G00981 N
GLYMA03G32747 Glycine max GLYMA03G32747 I
GLYMA06G22790 Glycine max GLYMA06G22790 N
GRMZM2G017349 Zea mays GRMZM2G017349 I
GRMZM2G030744 Zea mays GRMZM2G030744 I
LPERR06G03910 Leersia perrieri LPERR06G03910 I
MLOC_10815 Hordeum vulgare MLOC_10815 I
MLOC_49032 Hordeum vulgare MLOC_49032 N
MLOC_77331 Hordeum vulgare MLOC_77331 I
OB03G34880 Oryza brachyantha OB03G34880 N
OB06G13990 Oryza brachyantha OB06G13990 I
OBART06G04330 Oryza barthii OBART06G04330 I
OGLUM06G04430 Oryza glumaepatula OGLUM06G04430 I
OLONG_008764 Oryza longistaminata OLONG_008764 N
OLONG_014962 Oryza longistaminata OLONG_014962 I
OLONG_024366 Oryza longistaminata OLONG_024366 N
OMERI06G05430 Oryza meridionalis OMERI06G05430 I
OMERI10G14830 Oryza meridionalis OMERI10G14830 N
ONIVA06G05510 Oryza nivara ONIVA06G05510 I
ORGLA06G0039900 Oryza glaberrima ORGLA06G0039900 I
ORUFI06G04330 Oryza rufipogon ORUFI06G04330 I
Pavir.J15575 Panicum virgatum Pavir.J15575 I
Pavir.J38250 Panicum virgatum Pavir.J38250 I
PGSC0003DMG400024523 Solanum tuberosum PGSC0003DMG400024523 N
Sb01g029220 Sorghum bicolor Sb01g029220 N
Sb10g004500 Sorghum bicolor Sb10g004500 I
Thhalv10017520m.g Eutrema salsugineum Thhalv10017520m.g N
Traes_5AL_85F3BE385 Triticum aestivum Traes_5AL_85F3BE385 N
Traes_5DL_C6C077BB9 Triticum aestivum Traes_5DL_C6C077BB9 N
Traes_6AL_842E10085 Triticum aestivum Traes_6AL_842E10085 N
Traes_6DL_C8198CD4A Triticum aestivum Traes_6DL_C8198CD4A N
Traes_7BS_F67ED5C9E Triticum aestivum Traes_7BS_F67ED5C9E I