CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

orange1.1g023209m.g *(Citrus sinensis)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	orange1.1g023209m.g	T009225_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.836	0.784
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.836	0.784
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.835	0.824
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.835	0.824
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.835	0.824
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.823	0.863
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.822	0.843
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.822	0.843
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.822	0.843
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.816	0.863
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.782	0.745
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.758	0.725
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.746	0.725
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.746	0.725
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.730	0.686
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.727	0.706
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.724	0.706
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.712	0.765
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.712	0.765
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.711	0.608
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.707	0.765
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.706	0.745
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.706	0.745
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.705	0.706
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.705	0.706
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.705	0.706
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.704	0.725
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.704	0.725
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.704	0.725
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.704	0.725
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.704	0.725
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.703	0.725
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.703	0.725
ERF094 M01602_2.00	Arabidopsis thaliana	VGCCGCCD	HGGCGGCB	PBM Weirauch et al.(2014) pTH8276	0.703	0.765
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.701	0.647
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.700	0.745
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.700	0.745
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.700	0.745
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.699	0.647
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.696	0.706
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.696	0.706
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.694	0.725
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.688	0.725
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.688	0.725
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.687	0.667
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.686	0.608
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.685	0.647
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.685	0.647
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.685	0.647
OS05G0497200 M01636_2.00	Oryza sativa	CGSCGCCR	YGGCGSCG	PBM Weirauch et al.(2014) pTH8640	0.684	0.686
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.683	0.667
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.683	0.667
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.683	0.647
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.682	0.647
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.682	0.647
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.680	0.686
ERF15 M00718_2.00	Arabidopsis thaliana	NGSCGSCB	VGSCGSCN	PBM Chang et al.(2013) pTH7336	0.678	0.686
ERF15 M06604_2.00	Arabidopsis thaliana	NNNHNNHDBMGCCGCCDY	RHGGCGGCKVHDNNDNNN	Dap-seq OMalley et al.(2016) ERF15_colamp_a	0.678	0.686
ERF15 M06605_2.00	Arabidopsis thaliana	NNYHDYMGCCGCCRY	RYGGCGGCKRHDRNN	Dap-seq OMalley et al.(2016) ERF15_col	0.678	0.686
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
orange1.1g023209m	AP2	137	189	KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGS

Links
Other AP2 family TFs
Other *Citrus sinensis* TFs

1710 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BGIOSGA009571	Oryza indica	BGIOSGA009571	I	0.687
Bo4g009400	Brassica oleracea	Bo4g009400	I	0.711
Bo8g118250	Brassica oleracea	Bo8g118250	I	0.721
Bra004548	Brassica rapa	Bra004548	I	0.711
Bra032665	Brassica rapa	Bra032665	I	0.721
BRADI2G07357	Brachypodium distachyon	BRADI2G07357	I
BRADI2G31480	Brachypodium distachyon	BRADI2G31480	I	0.727
Carubv10028227m.g	Capsella rubella	Carubv10028227m.g	I	0.714
Ciclev10002183m.g	Citrus clementina	Ciclev10002183m.g	I	0.712
Cla021505	Citrullus lanatus	Cla021505	I	0.726
Cucsa.201950	Cucumis sativus	Cucsa.201950	I	0.707
Cucsa.258900	Cucumis sativus	Cucsa.258900	I	0.726
F775_13439	Aegilops tauschii	F775_13439	I	0.715
GRMZM2G044077	Zea mays	GRMZM2G044077	I
GRMZM2G142179	Zea mays	GRMZM2G142179	I	0.678
GRMZM2G171569	Zea mays	GRMZM2G171569	I	0.689
GRMZM2G328197	Zea mays	GRMZM2G328197	I	0.729
GRMZM2G429378	Zea mays	GRMZM2G429378	I	0.724
GSMUA_Achr10G01110_001	Musa acuminata	GSMUA_Achr10G01110_001	I	0.686
GSMUA_Achr10G14570_001	Musa acuminata	GSMUA_Achr10G14570_001	I	0.729
GSMUA_Achr11G19880_001	Musa acuminata	GSMUA_Achr11G19880_001	I	0.717
GSMUA_Achr4G16600_001	Musa acuminata	GSMUA_Achr4G16600_001	I	0.730
GSMUA_Achr5G27850_001	Musa acuminata	GSMUA_Achr5G27850_001	I	0.713
GSMUA_Achr6G14240_001	Musa acuminata	GSMUA_Achr6G14240_001	I	0.686
GSMUA_Achr7G21980_001	Musa acuminata	GSMUA_Achr7G21980_001	I	0.716
GSMUA_Achr8G01690_001	Musa acuminata	GSMUA_Achr8G01690_001	I	0.681
GSMUA_Achr9G28840_001	Musa acuminata	GSMUA_Achr9G28840_001	I	0.681
LPERR01G07340	Leersia perrieri	LPERR01G07340	I	0.678
LPERR03G32900	Leersia perrieri	LPERR03G32900	I	0.713
Lus10005281.g	Linum usitatissimum	Lus10005281.g	I	0.756
Lus10013958.g	Linum usitatissimum	Lus10013958.g	I	0.756
MDP0000190504	Malus domestica	MDP0000190504	I	0.702
MLOC_40486	Hordeum vulgare	MLOC_40486	I	0.723
MLOC_58641	Hordeum vulgare	MLOC_58641	I	0.680
OBART03G38710	Oryza barthii	OBART03G38710	I	0.687
OGLUM01G08910	Oryza glumaepatula	OGLUM01G08910	I
OGLUM03G38530	Oryza glumaepatula	OGLUM03G38530	I	0.687
OMERI01G07770	Oryza meridionalis	OMERI01G07770	I
OMERI03G35630	Oryza meridionalis	OMERI03G35630	I	0.687
ONIVA01G10020	Oryza nivara	ONIVA01G10020	I
ONIVA03G40360	Oryza nivara	ONIVA03G40360	I	0.687
OPUNC01G07600	Oryza punctata	OPUNC01G07600	I
OPUNC03G35790	Oryza punctata	OPUNC03G35790	I	0.684
orange1.1g043400m.g	Citrus sinensis	orange1.1g043400m.g	I	0.712
ORGLA01G0069400	Oryza glaberrima	ORGLA01G0069400	I
ORGLA03G0354400	Oryza glaberrima	ORGLA03G0354400	I	0.687
ORUFI01G08530	Oryza rufipogon	ORUFI01G08530	I
ORUFI03G40350	Oryza rufipogon	ORUFI03G40350	I	0.687
OS01G0224100	Oryza sativa	OS01G0224100	I
OS03G0815800	Oryza sativa	OS03G0815800	I	0.687
Pavir.Da00220	Panicum virgatum	Pavir.Da00220	I	0.693
Pavir.Db02131	Panicum virgatum	Pavir.Db02131	I	0.727
Pavir.Ea00119	Panicum virgatum	Pavir.Ea00119	I
Pavir.Eb00092	Panicum virgatum	Pavir.Eb00092	I
Pavir.Fa01728	Panicum virgatum	Pavir.Fa01728	I	0.727
Pavir.Fb00951	Panicum virgatum	Pavir.Fb00951	I	0.727
Pavir.J11205	Panicum virgatum	Pavir.J11205	I	0.740
Pavir.J13096	Panicum virgatum	Pavir.J13096	I	0.729
Pavir.J24236	Panicum virgatum	Pavir.J24236	I	0.736
Pavir.J26710	Panicum virgatum	Pavir.J26710	I	0.716
Pavir.J29117	Panicum virgatum	Pavir.J29117	I	0.736
Sb02g006780	Sorghum bicolor	Sb02g006780	I	0.702
Sb03g001296	Sorghum bicolor	Sb03g001296	I	0.678
Sb05g001280	Sorghum bicolor	Sb05g001280	I	0.717
Si002247m.g	Setaria italica	Si002247m.g	I
TRAES3BF017100030CFD_g	Triticum aestivum	TRAES3BF017100030CFD_g	I	0.680
TRIUR3_07811	Triticum urartu	TRIUR3_07811	I	0.764

orange1.1g023209m.g (Citrus sinensis) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1710 Related TFs

orange1.1g023209m.g **(Citrus sinensis)
AP2**