CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

orange1.1g028454m.g *(Citrus sinensis)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	orange1.1g028454m.g	T009238_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.848	0.960
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.848	0.960
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.848	0.960
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.836	0.900
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.836	0.900
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.829	0.880
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.829	0.880
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.822	0.880
ERF8 M01608_2.00	Arabidopsis thaliana	MGCCGNMNNN	NNNKNCGGCK	PBM Weirauch et al.(2014) pTH8095	0.813	0.900
ERF8 M06586_2.00	Arabidopsis thaliana	NYHDYCKCCGCCGYH	DRCGGCGGMGRHDRN	Dap-seq OMalley et al.(2016) ERF8_col_a	0.813	0.900
ERF8 M06587_2.00	Arabidopsis thaliana	HNNHDSCGCCGYCRHHDN	NHDDYGRCGGCGSHDNND	Dap-seq OMalley et al.(2016) ERF8_colamp_a	0.813	0.900
ERF11 M01606_2.00	Arabidopsis thaliana	NHGCCGNHNN	NNDNCGGCDN	PBM Weirauch et al.(2014) pTH8117	0.756	0.820
ERF11 M06575_2.00	Arabidopsis thaliana	NHNNHDSCGCCGYCRHHNNN	NNNDDYGRCGGCGSHDNNDN	Dap-seq OMalley et al.(2016) ERF11_colamp_a	0.756	0.820
ERF11 M06576_2.00	Arabidopsis thaliana	NHNYCKCCGCCGYHD	HDRCGGCGGMGRNDN	Dap-seq OMalley et al.(2016) ERF11_col_b	0.756	0.820
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.748	0.800
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.748	0.800
ERF7 M01617_2.00	Arabidopsis thaliana	NGCCGNMNNN	NNNKNCGGCN	PBM Weirauch et al.(2014) pTH7606	0.744	0.780
ERF7 M06620_2.00	Arabidopsis thaliana	YHNHYNYYDYCDCCGCCGYCD	HGRCGGCGGHGRHRRNRDNDR	Dap-seq OMalley et al.(2016) ERF7_col_a	0.744	0.780
ERF7 M06621_2.00	Arabidopsis thaliana	NNNHNNHNHHDSCGCCGCCRH	DYGGCGGCGSHDDNDNNDNNN	Dap-seq OMalley et al.(2016) ERF7_colamp_a	0.744	0.780
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.739	0.740
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.728	0.740
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.727	0.740
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.718	0.760
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.718	0.760
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.718	0.760
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.715	0.700
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.707	0.700
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.707	0.700
PK17878.1 M01099_2.00	Cannabis sativa	CGCCGYCR	YGRCGGCG	PBM Lambert et al.(2019) pTH10133	0.705	0.760
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.703	0.700
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.703	0.700
ERF3 M01607_2.00	Arabidopsis thaliana	CGCCGSCR	YGSCGGCG	PBM Weirauch et al.(2014) pTH8109	0.702	0.700
ERF3 M06584_2.00	Arabidopsis thaliana	YHDYCKCCGCCGYHD	HDRCGGCGGMGRHDR	Dap-seq OMalley et al.(2016) ERF3_col_a	0.702	0.700
ERF3 M06585_2.00	Arabidopsis thaliana	NNHHDNHNNYDCCGCCGYCR	YGRCGGCGGHRNNDNHDDNN	Dap-seq OMalley et al.(2016) ERF3_colamp_a	0.702	0.700
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.700	0.700
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.700	0.700
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.700	0.700
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.699	0.700
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.699	0.700
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.699	0.700
ERF087 M06573_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYYD	HRRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) AT1G28160_col_a	0.698	0.740
ERF087 M06574_2.00	Arabidopsis thaliana	HDYCKCCGCCGYCR	YGRCGGCGGMGRHD	Dap-seq OMalley et al.(2016) AT1G28160_colamp_a	0.698	0.740
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.695	0.620
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.694	0.680
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.694	0.700
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.693	0.740
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.691	0.640
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.688	0.720
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.688	0.660
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.686	0.720
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.686	0.720
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.686	0.720
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.686	0.720
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.686	0.680
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.686	0.680
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.680	0.620
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.678	0.720
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.678	0.720
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.678	0.720
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.678	0.740
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
orange1.1g028454m	AP2	23	74	IRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGA

Links
Other AP2 family TFs
Other *Citrus sinensis* TFs

1700 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A1O1_05565	Capronia coronata	A1O1_05565	I
A1O3_09206	Capronia epimyces	A1O3_09206	I
A1O5_09341	Cladophialophora psammophila	A1O5_09341	I
A1O7_07556	Cladophialophora yegresii	A1O7_07556	I
A1O9_09292	Exophiala aquamarina	A1O9_09292	I
ACRE_047960	Acremonium chrysogenum	ACRE_047960	I
AOL_s00078g183	Arthrobotrys oligospora	AOL_s00078g183	I
BBA_05317	Beauveria bassiana	BBA_05317	I
Bcin05g07400	Botrytis cinerea	Bcin05g07400	D
BDDG_04662	Blastomyces dermatitidis	BDDG_04662	I
ACLA_057300	Aspergillus clavatus	CADACLAG00005493	I
ACLA_076330	Aspergillus clavatus	CADACLAG00007259	I
CADAFLAG00013329	Aspergillus flavus	CADAFLAG00013329	I
AFUA_8G03970	Aspergillus fumigatus	CADAFUAG00003044	I
ANIA_01406	Aspergillus nidulans	CADANIAG00008016	I
CADAORAG00009941	Aspergillus oryzae	CADAORAG00009941	I
NFIA_096670	Neosartorya fischeri	CADNFIAG00009220	I
CCM_07661	Cordyceps militaris	CCM_07661	I
CFIO01_10853	Colletotrichum fioriniae	CFIO01_10853	I
CGGC5_11802	Colletotrichum gloeosporioides	CGGC5_11802	I
CH063_10117	Colletotrichum higginsianum	CH063_10117	I
Cob_13345	Colletotrichum orbiculare	Cob_13345	I
COCC4DRAFT_131281	Bipolaris maydis	COCC4DRAFT_131281	I
COCCADRAFT_85714	Bipolaris zeicola	COCCADRAFT_85714	I
COCMIDRAFT_104594	Bipolaris oryzae	COCMIDRAFT_104594	I
COCSADRAFT_92438	Bipolaris sorokiniana	COCSADRAFT_92438	I
COCVIDRAFT_94490	Bipolaris victoriae	COCVIDRAFT_94490	I
CSUB01_12250	Colletotrichum sublineola	CSUB01_12250	I
CTHT_0054920	Chaetomium thermophilum	CTHT_0054920	I
DRE_06035	Drechslerella stenobrocha	DRE_06035	I
estExt_fgenesh1_pg.C_40812	Cryphonectria parasitica	estExt_fgenesh1_pg.C_40812	I
estExt_fgenesh2_pg.C_20614	Neurospora discreta	estExt_fgenesh2_pg.C_20614	I
EURHEDRAFT_454510	Aspergillus ruber	EURHEDRAFT_454510	I
EV44_g4546	Erysiphe necator	EV44_g4546	I
e_gw1.1.1349.1	Nectria haematococca	e_gw1.1.1349.1	I
e_gw1.3.38.1	Cochliobolus heterostrophus C5	e_gw1.3.38.1	I
F503_05162	Ophiostoma piceae uamh	F503_05162	I
FFUJ_04086	Fusarium fujikuroi	FFUJ_04086	I
fgenesh1_pm.00168_#_532	Aspergillus carbonarius	fgenesh1_pm.00168_#_532	I
FGRRES_17192	Fusarium graminearum	FGRRES_17192	I
FOXG_05918	Fusarium oxysporum	FOXG_05918	I
FPSE_09716	Fusarium pseudograminearum	FPSE_09716	I
FVEG_03789	Fusarium verticillioides	FVEG_03789	I
G647_02529	Cladophialophora carrionii	G647_02529	I
GGTG_00966	Gaeumannomyces graminis	GGTG_00966	I
GLRG_00660	Colletotrichum graminicola	GLRG_00660	I
GMDG_00720	Pseudogymnoascus destructans	GMDG_00720	I
GSTUM_00008737001	Tuber melanosporum	GSTUM_00008737001	I
H072_5123	Dactylellina haptotyla	H072_5123	I
HCBG_04788	Histoplasma capsulatum	HCBG_04788	I
HMPREF1120_07798	Exophiala dermatitidis	HMPREF1120_07798	I
HMPREF1541_08013	Cyphellophora europaea	HMPREF1541_08013	I
MAC_06599	Metarhizium acridum	MAC_06599	I
MAJ_09934	Metarhizium majus	MAJ_09934	I
MAM_07569	Metarhizium album	MAM_07569	I
MANI_121568	Metarhizium anisopliae	MANI_121568	I
MAPG_07711	Magnaporthe poae	MAPG_07711	I
MBM_03422	Marssonina brunnea	MBM_03422	I
MGG_17060	Magnaporthe oryzae	MGG_17060	I
MGU_07934	Metarhizium guizhouense	MGU_07934	I
MPH_00528	Macrophomina phaseolina	MPH_00528	I
MYCTH_2295212	Myceliophthora thermophila	MYCTH_2295212	I
NCU02576	Neurospora crassa	NCU02576	D
NechaG31542	Fusarium solani	NechaG31542	I
NEUTE1DRAFT_73358	Neurospora tetrasperma	NEUTE1DRAFT_73358	I
OIDMADRAFT_43859	Oidiodendron maius	OIDMADRAFT_43859	I
PAAG_07780	Paracoccidioides sp lutzii	PAAG_07780	I
PABG_00345	Paracoccidioides brasiliensis	PABG_00345	I
Pc22g10180	Penicillium chrysogenum	Pc22g10180	I
PCH_Pc22g10180	Penicillium rubens	PCH_Pc22g10180	I
PDE_00983	Penicillium oxalicum	PDE_00983	I
PEX1_034110	Penicillium expansum	PEX1_034110	I
PFICI_13658	Pestalotiopsis fici	PFICI_13658	I
PITC_007110	Penicillium italicum	PITC_007110	I
PMAA_060350	Talaromyces marneffei	PMAA_060350	I
PMAA_060350	Penicillium marneffei	PMAA_060350	I
PODANS_1_8960	Podospora anserina	PODANS_1_8960	I
PTT_01647	Pyrenophora teres	PTT_01647	I
PV04_08029	Capronia semiimmersa	PV04_08029	I
PV05_10063	Exophiala xenobiotica	PV05_10063	I
PV06_09524	Exophiala oligosperma	PV06_09524	I
PV07_11741	Cladophialophora immunda	PV07_11741	I
PV08_03946	Exophiala spinifera	PV08_03946	I
PV09_04867	Verruconis gallopava	PV09_04867	I
PV10_06666	Exophiala mesophila	PV10_06666	I
PV11_08966	Exophiala sideris	PV11_08966	I
S40285_06932	Stachybotrys chlorohalonata	S40285_06932	I
S40288_06487	Stachybotrys chartarum	S40288_06487	I
SAPIO_CDS5525	Scedosporium apiospermum	SAPIO_CDS5525	I
SBOR_8563	Sclerotinia borealis	SBOR_8563	I
SETTUDRAFT_160027	Setosphaeria turcica	SETTUDRAFT_160027	I
SMAC_05786	Sordaria macrospora	SMAC_05786	I
SS1G_12158	Sclerotinia sclerotiorum	SS1G_12158	I
THITE_2122040	Thielavia terrestris	THITE_2122040	I
TRIATDRAFT_323311	Trichoderma atroviride	TRIATDRAFT_323311	I
TRIREDRAFT_108940	Trichoderma reesei	TRIREDRAFT_108940	I
TRIVIDRAFT_85198	Trichoderma virens	TRIVIDRAFT_85198	I
TSTA_011180	Talaromyces stipitatus	TSTA_011180	I
U727_00431300241	Penicillium solitum	U727_00431300241	I
UCRNP2_4523	Neofusicoccum parvum	UCRNP2_4523	I
UV8b_6694	Ustilaginoidea virens	UV8b_6694	I
V499_02224	Pseudogymnoascus pannorum	V499_02224	I
VDBG_03734	Verticillium albo atrum	VDBG_03734	I
VDBG_03734	Verticillium alfalfae	VDBG_03734	I
VHEMI03709	Torrubiella hemipterigena	VHEMI03709	I
W97_03429	Coniosporium apollinis	W97_03429	I
X797_008205	Metarhizium robertsii	X797_008205	I
Z517_03147	Fonsecaea pedrosoi	Z517_03147	I
Z518_09159	Rhinocladiella mackenziei	Z518_09159	I
Z519_01226	Cladophialophora bantiana	Z519_01226	I

orange1.1g028454m.g (Citrus sinensis) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1700 Related TFs

orange1.1g028454m.g **(Citrus sinensis)
AP2**