Pavir.J23882 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J23882 T009607_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF014
M06581_2.00 		Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR		 Dap-seq
OMalley et al.(2016)
AT1G44830_col_a 		0.773 0.900
ERF012
M06570_2.00 		Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN		 Dap-seq
OMalley et al.(2016)
DREB26_col_a 		0.760 0.860
ERF013
M06601_2.00 		Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g77640_col_a 		0.741 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J23882.1.p AP2 23 74

Links

Other AP2 family TFs
Other Panicum virgatum TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_054570 Acremonium chrysogenum ACRE_054570 N 0.000
Bcin02g08310 Botrytis cinerea Bcin02g08310 N 0.000
CFIO01_08071 Colletotrichum fioriniae CFIO01_08071 N 0.000
CGGC5_3607 Colletotrichum gloeosporioides CGGC5_3607 N 0.000
Cob_05888 Colletotrichum orbiculare Cob_05888 N 0.000
CSUB01_01660 Colletotrichum sublineola CSUB01_01660 N 0.000
CTHT_0048430 Chaetomium thermophilum CTHT_0048430 N 0.000
estExt_Genewise1.C_100108 Cryphonectria parasitica estExt_Genewise1.C_100108 N 0.000
FFUJ_13620 Fusarium fujikuroi FFUJ_13620 N 0.000
fgenesh1_pm.sca_3_chr4_2_0000036 Nectria haematococca fgenesh1_pm.sca_3_chr4_2_0000036 N 0.000
FGRRES_06382 Fusarium graminearum FGRRES_06382 N 0.000
FPSE_05827 Fusarium pseudograminearum FPSE_05827 N 0.000
GGTG_05245 Gaeumannomyces graminis GGTG_05245 N 0.000
GLRG_06776 Colletotrichum graminicola GLRG_06776 N 0.000
GMDG_04399 Pseudogymnoascus destructans GMDG_04399 N 0.000
MAC_07589 Metarhizium acridum MAC_07589 N 0.000
MAJ_08773 Metarhizium majus MAJ_08773 N 0.000
MANI_028863 Metarhizium anisopliae MANI_028863 N 0.000
MAPG_03623 Magnaporthe poae MAPG_03623 N 0.000
MBR_08228 Metarhizium brunneum MBR_08228 N 0.000
MGG_09562 Magnaporthe oryzae MGG_09562 N 0.000
MGU_03399 Metarhizium guizhouense MGU_03399 N 0.000
NCU02386 Neurospora crassa NCU02386 N 0.000
NechaG92421 Fusarium solani NechaG92421 N 0.000
OCS_00747 Ophiocordyceps sinensis OCS_00747 N 0.000
OCS_04593 Ophiocordyceps sinensis OCS_04593 N 0.000
PFICI_03549 Pestalotiopsis fici PFICI_03549 N 0.000
PV09_03404 Verruconis gallopava PV09_03404 N 0.000
SAPIO_CDS4519 Scedosporium apiospermum SAPIO_CDS4519 N 0.000
SBOR_2961 Sclerotinia borealis SBOR_2961 N 0.000
TRIATDRAFT_293053 Trichoderma atroviride TRIATDRAFT_293053 N 0.000
TRIREDRAFT_60897 Trichoderma reesei TRIREDRAFT_60897 N 0.000
TRIVIDRAFT_74205 Trichoderma virens TRIVIDRAFT_74205 N 0.000
UCREL1_9565 Eutypa lata UCREL1_9565 N 0.000
V499_02769 Pseudogymnoascus pannorum V499_02769 N 0.000
VDAG_09459 Verticillium dahliae VDAG_09459 N 0.000
VHEMI08999 Torrubiella hemipterigena VHEMI08999 N 0.000
X797_000968 Metarhizium robertsii X797_000968 N 0.000
X797_003516 Metarhizium robertsii X797_003516 N 0.000