Thhalv10013081m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10013081m.g T009929_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AIL7
M06688_2.00 		Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG		 Dap-seq
OMalley et al.(2016)
AIL7_col_a 		0.923 0.971
AIL7
M06689_2.00 		Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH		 Dap-seq
OMalley et al.(2016)
AIL7_colamp_a 		0.923 0.971
PLT1
M06622_2.00 		Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH		 Dap-seq
OMalley et al.(2016)
PLT1_col_a 		0.868 0.876
PLT1
M06623_2.00 		Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH		 Dap-seq
OMalley et al.(2016)
PLT1_colamp_a 		0.868 0.876
ANT
M02647_2.00 		Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH		 SELEX
Mathelier et al.(2014)
MA0571.1 		0.844 0.857
ANT
M09705_2.00 		Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG		 Transfac
Matys et al.(2006)
P$ANT_01 		0.844 0.857
Q6SA75_TOBAC
M09733_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_01 		0.839 0.848
Q6SA75_TOBAC
M09734_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_02 		0.839 0.848
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10013081m AP2 266 326
Thhalv10013081m AP2 368 420

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

576 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA012523 Oryza indica BGIOSGA012523 N 0.000
BGIOSGA012525 Oryza indica BGIOSGA012525 N 0.000
BGIOSGA034616 Oryza indica BGIOSGA034616 N 0.000
BGIOSGA036760 Oryza indica BGIOSGA036760 N 0.000
BRADI1G63910 Brachypodium distachyon BRADI1G63910 N 0.000
BRADI2G22230 Brachypodium distachyon BRADI2G22230 I 0.000
F775_02926 Aegilops tauschii F775_02926 N 0.000
F775_31089 Aegilops tauschii F775_31089 N 0.000
F775_31341 Aegilops tauschii F775_31341 I 0.000
GRMZM2G030272 Zea mays GRMZM2G030272 N 0.000
GRMZM2G099593 Zea mays GRMZM2G099593 N 0.000
LPERR03G13630 Leersia perrieri LPERR03G13630 N 0.000
LPERR11G00940 Leersia perrieri LPERR11G00940 N 0.000
MLOC_57051 Hordeum vulgare MLOC_57051 I 0.000
MLOC_57764 Hordeum vulgare MLOC_57764 N 0.000
OB03G25300 Oryza brachyantha OB03G25300 N 0.000
OB11G10730 Oryza brachyantha OB11G10730 N 0.000
OBART03G15470 Oryza barthii OBART03G15470 N 0.000
OBART11G01070 Oryza barthii OBART11G01070 N 0.000
OBART12G00800 Oryza barthii OBART12G00800 N 0.000
OGLUM03G15660 Oryza glumaepatula OGLUM03G15660 N 0.000
OGLUM12G01250 Oryza glumaepatula OGLUM12G01250 N 0.000
OGLUM12G01320 Oryza glumaepatula OGLUM12G01320 N 0.000
OLONG_001744 Oryza longistaminata OLONG_001744 N 0.000
OLONG_022888 Oryza longistaminata OLONG_022888 N 0.000
OLONG_028722 Oryza longistaminata OLONG_028722 N 0.000
OMERI11G01480 Oryza meridionalis OMERI11G01480 N 0.000
OMERI12G00120 Oryza meridionalis OMERI12G00120 N 0.000
ONIVA03G16490 Oryza nivara ONIVA03G16490 N 0.000
ONIVA11G01010 Oryza nivara ONIVA11G01010 N 0.000
ONIVA12G00800 Oryza nivara ONIVA12G00800 N 0.000
OPUNC03G15030 Oryza punctata OPUNC03G15030 N 0.000
OPUNC11G00930 Oryza punctata OPUNC11G00930 N 0.000
OPUNC12G00950 Oryza punctata OPUNC12G00950 N 0.000
ORGLA03G0148400 Oryza glaberrima ORGLA03G0148400 N 0.000
ORGLA11G0201600 Oryza glaberrima ORGLA11G0201600 N 0.000
ORGLA12G0007100 Oryza glaberrima ORGLA12G0007100 N 0.000
ORUFI03G16080 Oryza rufipogon ORUFI03G16080 N 0.000
ORUFI11G01010 Oryza rufipogon ORUFI11G01010 N 0.000
ORUFI12G01140 Oryza rufipogon ORUFI12G01140 N 0.000
OS03G0321700 Oryza sativa OS03G0321700 N 0.000
Pavir.Ca00178 Panicum virgatum Pavir.Ca00178 N 0.000
Pavir.Ga02545 Panicum virgatum Pavir.Ga02545 N 0.000
Pavir.Hb02025 Panicum virgatum Pavir.Hb02025 N 0.000
Pavir.Ib01500 Panicum virgatum Pavir.Ib01500 N 0.000
Pavir.J07662 Panicum virgatum Pavir.J07662 I 0.000
Pavir.J18239 Panicum virgatum Pavir.J18239 I 0.000
Pavir.J35902 Panicum virgatum Pavir.J35902 I 0.000
Pavir.J41073 Panicum virgatum Pavir.J41073 I 0.000
Sb01g036870 Sorghum bicolor Sb01g036870 N 0.000
Sb05g001170 Sorghum bicolor Sb05g001170 N 0.000
Si010706m.g Setaria italica Si010706m.g N 0.000
Si024816m.g Setaria italica Si024816m.g I 0.000
Si026670m.g Setaria italica Si026670m.g N 0.000
Si027769m.g Setaria italica Si027769m.g N 0.000
Si027946m.g Setaria italica Si027946m.g N 0.000
Si027998m.g Setaria italica Si027998m.g N 0.000
Si028270m.g Setaria italica Si028270m.g N 0.000
Si039519m.g Setaria italica Si039519m.g N 0.000
Traes_1AL_309623B48 Triticum aestivum Traes_1AL_309623B48 N 0.000
Traes_1AL_B24F28600 Triticum aestivum Traes_1AL_B24F28600 I 0.000
Traes_1BL_46340D685 Triticum aestivum Traes_1BL_46340D685 N 0.000
Traes_1BL_B4AFDB663 Triticum aestivum Traes_1BL_B4AFDB663 I 0.000
Traes_1DL_DFE1721E0 Triticum aestivum Traes_1DL_DFE1721E0 N 0.000
Traes_4AS_70DF607CC Triticum aestivum Traes_4AS_70DF607CC N 0.000
Traes_4BL_A8C6FBEB6 Triticum aestivum Traes_4BL_A8C6FBEB6 N 0.000
Traes_4DL_3140A8240 Triticum aestivum Traes_4DL_3140A8240 N 0.000
TRIUR3_06231 Triticum urartu TRIUR3_06231 N 0.000
TRIUR3_22129 Triticum urartu TRIUR3_22129 N 0.000
TRIUR3_34396 Triticum urartu TRIUR3_34396 I 0.000