Thhalv10021421m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10021421m.g T009974_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-3
M01050_2.00 		Arabidopsis thaliana
CGCCGCCR
YGGCGGCG		 PBM
Sullivan et al.(2014)
pTH8811 		0.843 0.960
RAP2-3
M00847_2.00 		Arabidopsis thaliana
NMGCCGCCDN
NHGGCGGCKN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.3 		0.843 0.960
Q7Y1W2_TOBAC
M09735_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CEF1_01 		0.783 0.860
EREBP1
M09708_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$EREBP1_01 		0.775 0.840
Q2TN80_WHEAT
M09715_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_02 		0.770 0.780
RAP2-2
M00719_2.00 		Arabidopsis thaliana
NNRBYGNN
NNCRVYNN		 PBM
Chang et al.(2013)
pTH7227 		0.761 0.840
HRE1
M06595_2.00 		Arabidopsis thaliana
NHNBMDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHKVNDN		 Dap-seq
OMalley et al.(2016)
ERF73_col_a 		0.729 0.760
HRE1
M06596_2.00 		Arabidopsis thaliana
HNYHDMHNYCDCCGCCGCCRY
RYGGCGGCGGHGRNDKHDRND		 Dap-seq
OMalley et al.(2016)
ERF73_colamp_a 		0.729 0.760
ERF091
M06638_2.00 		Arabidopsis thaliana
NNHNYHDCCGCCGCCRY
RYGGCGGCGGHDRNDNN		 Dap-seq
OMalley et al.(2016)
AT4G18450_col_a 		0.720 0.780
ERF105
M01632_2.00 		Arabidopsis thaliana
CGCCGGCM
KGCCGGCG		 PBM
Weirauch et al.(2014)
pTH7233 		0.711 0.700
ERF105
M06676_2.00 		Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN		 Dap-seq
OMalley et al.(2016)
ERF105_colamp_a 		0.711 0.700
ERF105
M06677_2.00 		Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF105_col 		0.711 0.700
RAP2-12
M01046_2.00 		Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY		 PBM
Sullivan et al.(2014)
pTH7359 		0.710 0.780
RAP2-12
M06588_2.00 		Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN		 Dap-seq
OMalley et al.(2016)
RAP212_col_a 		0.710 0.780
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.700 0.680
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.700 0.680
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.700 0.720
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.700 0.720
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.700 0.720
0100010458
M01644_2.00 		Ostreococcus tauri
MGCCGSCR
YGSCGGCK		 PBM
Weirauch et al.(2014)
pTH9447 		0.699 0.740
ERF096
M01630_2.00 		Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN		 PBM
Weirauch et al.(2014)
pTH7909 		0.699 0.700
ERF095
M06624_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ESE1_col_a 		0.698 0.720
ERF095
M06625_2.00 		Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR		 Dap-seq
OMalley et al.(2016)
ESE1_colamp_a 		0.698 0.720
ERF104
M06682_2.00 		Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH
DRYGGCGGCGGHKRHDDNN		 Dap-seq
OMalley et al.(2016)
ERF104_col_a 		0.697 0.640
ERF104
M06683_2.00 		Arabidopsis thaliana
BHDSCGCCGCCRYHD
HDRYGGCGGCGSHDV		 Dap-seq
OMalley et al.(2016)
ERF104_colamp_a 		0.697 0.640
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.696 0.700
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.696 0.700
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.695 0.700
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.693 0.700
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.693 0.700
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.693 0.700
CRF2
M01622_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8680 		0.692 0.700
ERF5_TOBAC
M09729_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF4_02 		0.684 0.680
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10021421m AP2 77 128

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

1070 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R003252 Aptenodytes forsteri Afo_R003252 N
Alligator_sinensis_CCG001719.1 Alligator sinensis Alligator_sinensis_CCG001719.1 N
BGIOSGA033447 Oryza indica BGIOSGA033447 I 0.679
Bo7g111760 Brassica oleracea Bo7g111760 I 0.678
Bo8g049450 Brassica oleracea Bo8g049450 I 0.677
Bra040839 Brassica rapa Bra040839 I 0.678
BRADI2G45530 Brachypodium distachyon BRADI2G45530 I 0.677
Brh_R009888 Buceros rhinoceros Brh_R009888 N
cassava18871.valid.m1 Manihot esculenta cassava18871.valid.m1 I 0.677
cassava18872.valid.m1 Manihot esculenta cassava18872.valid.m1 I 0.677
cassava32471.m1 Manihot esculenta cassava32471.m1 I 0.679
Ca_13084 Cicer arietinum Ca_13084 I 0.677
CHLREDRAFT_205920 Chlamydomonas reinhardtii CHLREDRAFT_205920 I 0.679
Ciclev10028930m.g Citrus clementina Ciclev10028930m.g I 0.678
Cla004992 Citrullus lanatus Cla004992 I 0.678
Cmyd_10017466 Chelonia mydas Cmyd_10017466 N
Cucsa.201950 Cucumis sativus Cucsa.201950 I 0.678
ZNF217 Anolis carolinensis ENSACAG00000012676 N
ENSAPLG00000006344 Anas platyrhynchos ENSAPLG00000006344 N
ENSFALG00000013177 Ficedula albicollis ENSFALG00000013177 N
ENSGALG00000007799 Gallus gallus ENSGALG00000007799 N
ZNF217 Meleagris gallopavo ENSMGAG00000009292 N
ZNF217 Taeniopygia guttata ENSTGUG00000016531 N
evm.TU.supercontig_151.27 Carica papaya evm.TU.supercontig_151.27 I 0.679
Gfo_R009584 Geospiza fortis Gfo_R009584 N
GLYMA04G41740 Glycine max GLYMA04G41740 I 0.679
GLYMA06G13040 Glycine max GLYMA06G13040 I 0.679
Gorai.006G208200 Gossypium raimondii Gorai.006G208200 I 0.678
GRMZM2G138396 Zea mays GRMZM2G138396 I 0.677
GRMZM2G474326 Zea mays GRMZM2G474326 I 0.679
GSMUA_Achr11G16200_001 Musa acuminata GSMUA_Achr11G16200_001 I 0.679
gw1.13.222.1 Physcomitrella patens gw1.13.222.1 I 0.679
Lus10007841.g Linum usitatissimum Lus10007841.g I 0.678
MDP0000229285 Malus domestica MDP0000229285 I 0.677
MDP0000240840 Malus domestica MDP0000240840 I 0.678
MDP0000309801 Malus domestica MDP0000309801 I 0.678
MDP0000783818 Malus domestica MDP0000783818 I 0.677
MDP0000791464 Malus domestica MDP0000791464 I 0.678
MDP0000923579 Malus domestica MDP0000923579 I 0.678
MTR_1g069960 Medicago truncatula MTR_1g069960 I 0.679
MTR_1g074230 Medicago truncatula MTR_1g074230 I 0.677
MTR_7g096700 Medicago truncatula MTR_7g096700 I 0.678
OB09G12530 Oryza brachyantha OB09G12530 I 0.677
OBART09G12810 Oryza barthii OBART09G12810 I 0.679
OBART10G18670 Oryza barthii OBART10G18670 I 0.679
OGLUM09G13230 Oryza glumaepatula OGLUM09G13230 I 0.679
ONIVA02G20420 Oryza nivara ONIVA02G20420 I 0.677
ONIVA03G20710 Oryza nivara ONIVA03G20710 I 0.679
OPUNC10G17040 Oryza punctata OPUNC10G17040 I 0.679
ORGLA09G0098000 Oryza glaberrima ORGLA09G0098000 I 0.679
ORGLA10G0138000 Oryza glaberrima ORGLA10G0138000 I 0.679
ORUFI09G13770 Oryza rufipogon ORUFI09G13770 I 0.679
OS09G0457900 Oryza sativa OS09G0457900 I 0.679
Pavir.J36215 Panicum virgatum Pavir.J36215 I 0.678
PK23186.1 Cannabis sativa PK23186.1 I 0.679
POPTR_0003s13610 Populus trichocarpa POPTR_0003s13610 I 0.679
POPTR_0009s10470 Populus trichocarpa POPTR_0009s10470 I 0.678
SapurV1A.0118s0170 Salix purpurea SapurV1A.0118s0170 I 0.678
SapurV1A.0237s0040 Salix purpurea SapurV1A.0237s0040 I 0.679
SapurV1A.0643s0230 Salix purpurea SapurV1A.0643s0230 I 0.678
SapurV1A.2778s0010 Salix purpurea SapurV1A.2778s0010 I 0.678
SELMODRAFT_73135 Selaginella moellendorffii SELMODRAFT_73135 I 0.678
SELMODRAFT_73138 Selaginella moellendorffii SELMODRAFT_73138 I 0.678
Si024479m.g Setaria italica Si024479m.g I 0.678
Si030856m.g Setaria italica Si030856m.g I 0.677
Solyc03g006320.1 Solanum lycopersicum Solyc03g006320.1 I 0.677
Tal_R009322 Tyto alba Tal_R009322 N