SVUK_0001049401 (Strongylus vulgaris)
AP-2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03299 (TF_AP-2) IPR013854 SVUK_0001049401 T011571_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tfap2b
M00112_2.00 		Mus musculus
CCBSRGGSNW
WNSCCYSVGG		 PBM
Badis et al.(2009)
Tcfap2b_3988 		0.700 0.700
Tfap2e
M00114_2.00 		Mus musculus
NNGCCYBVGG
CCBVRGGCNN		 PBM
Badis et al.(2009)
Tcfap2e_3713 		0.700 0.700
TFAP2B
M02753_2.00 		Homo sapiens
HSCCYBVRGGCD
HGCCYBVRGGSD		 SELEX
Jolma et al.(2013)
TFAP2B_1 		0.700 0.700
TFAP2B
M02754_2.00 		Homo sapiens
HGCCTSRGGCD
HGCCYSAGGCD		 SELEX
Jolma et al.(2013)
TFAP2B_2 		0.700 0.700
TFAP2B
M02755_2.00 		Homo sapiens
WGCCCYBVRGGCD
HGCCYBVRGGGCW		 SELEX
Jolma et al.(2013)
TFAP2B_3 		0.700 0.700
TFAP2B
M04046_2.00 		Homo sapiens
NSCCBNVGGSN
NSCCBNVGGSN		 SELEX
Yin et al.(2017)
TFAP2B_eDBD_HT-SELEX 		0.700 0.700
TFAP2E
M04050_2.00 		Homo sapiens
HSCCYSRGGSD
HSCCYSRGGSD		 SELEX
Yin et al.(2017)
TFAP2E_FL_HT-SELEX_1 		0.700 0.700
TFAP2E
M04051_2.00 		Homo sapiens
NSCCBBVGGSCA
TGSCCBVVGGSN		 SELEX
Yin et al.(2017)
TFAP2E_FL_HT-SELEX_2 		0.700 0.700
TFAP2B
M08701_2.00 		Homo sapiens
GSCYGVGGRV
BYCCBCRGSC		 Misc
Kulakovskiy et al.(2013)
AP2B_HUMAN.H11MO.0.B 		0.700 0.700
Tfap2b
M08705_2.00 		Mus musculus
GSCYGVGGRV
BYCCBCRGSC		 Misc
Kulakovskiy et al.(2013)
AP2B_MOUSE.H11MO.0.B 		0.700 0.700
TFAP2B
M09750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP2BETA_Q3 		0.700 0.700
TFAP2B
M04047_2.00 		Homo sapiens
NSCCYNRGGSD
HSCCYNRGGSN		 SELEX
Yin et al.(2017)
TFAP2B_eDBD_Methyl-HT-SELEX 		0.700 0.700
TFAP2E
M04052_2.00 		Homo sapiens
HSCCYSRGGSD
HSCCYSRGGSD		 SELEX
Yin et al.(2017)
TFAP2E_FL_Methyl-HT-SELEX_1 		0.700 0.700
TFAP2E
M04053_2.00 		Homo sapiens
NSCCYNRGGGCR
YGCCCYNRGGSN		 SELEX
Yin et al.(2017)
TFAP2E_FL_Methyl-HT-SELEX_2 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVUK_0001049401-mRNA-1 AP-2 6 45

Links

Other AP-2 family TFs
Other Strongylus vulgaris TFs

2 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G44270 Brachypodium distachyon BRADI1G44270 N
LPERR06G08490 Leersia perrieri LPERR06G08490 N
OBART06G09580 Oryza barthii OBART06G09580 N
OGLUM06G10380 Oryza glumaepatula OGLUM06G10380 N
OLONG_020517 Oryza longistaminata OLONG_020517 N
OMERI06G11370 Oryza meridionalis OMERI06G11370 N
ONIVA06G11110 Oryza nivara ONIVA06G11110 N
ORGLA06G0090600 Oryza glaberrima ORGLA06G0090600 N
ORUFI06G09920 Oryza rufipogon ORUFI06G09920 N
OS06G0252300 Oryza sativa OS06G0252300 N
Si005790m.g Setaria italica Si005790m.g N
TRIUR3_08913 Triticum urartu TRIUR3_08913 N
TRIUR3_19801 Triticum urartu TRIUR3_19801 N