Alligator_sinensis_CCG003162.1 (Alligator sinensis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Alligator_sinensis_CCG003162.1 T015852_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.711 0.973
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.711 0.973
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.711 0.973
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.711 0.973
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.711 0.973
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.711 0.959
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.710 0.811
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.659 0.824
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.659 0.824
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.659 0.824
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.659 0.824
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.659 0.716
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.648 0.919
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.646 0.514
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.517 0.419
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.485 0.378
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG003162.1 ARID/BRIGHT 1 75

Links

Other ARID/BRIGHT family TFs
Other Alligator sinensis TFs

368 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL014670 Aedes aegypti AAEL014670 I
ACHR008952 Anopheles christyi ACHR008952 I
AEPI008594 Anopheles epiroticus AEPI008594 I
AGAP000512 Anopheles gambiae AGAP000512 I
Alligator_sinensis_CCG011289.1 Alligator sinensis Alligator_sinensis_CCG011289.1 I
Alligator_sinensis_CCG020461.1 Alligator sinensis Alligator_sinensis_CCG020461.1 I
ALUE_0001723701 Ascaris lumbricoides ALUE_0001723701 I
AMEC005819 Anopheles melas AMEC005819 I
AMEM005509 Anopheles merus AMEM005509 I
Aqu1.216869 Amphimedon queenslandica Aqu1.216869 I
AQUA008219 Anopheles quadriannulatus AQUA008219 I
A_05340 Schistosoma haematobium A_05340 I
BGIBMGA001129 Bombyx mori BGIBMGA001129 I
Bm11328 Brugia malayi Bm11328 I
CBG02541 Caenorhabditis briggsae CBG02541 I
CBN00477 Caenorhabditis brenneri CBN00477 I
CBN16859 Caenorhabditis brenneri CBN16859 I
CLEC025393 Cimex lectularius CLEC025393 I
CPIJ013490 Culex quinquefasciatus CPIJ013490 I
CpipJ_CPIJ013490 Culex pipiens CpipJ_CPIJ013490 I
D915_00206 Fasciola hepatica D915_00206 I
D917_06432 Trichinella nativa D917_06432 I
D918_02241 Trichuris suis D918_02241 I
ECANG7_01760 Echinococcus canadensis ECANG7_01760 I
EFV53558 Trichinella spiralis EFV53558 I
TEAD3 Anolis carolinensis ENSACAG00000009142 I
TEAD3 Canis familiaris ENSCAFG00000001326 I
ENSCING00000019408 Ciona intestinalis ENSCING00000019408 I
TEAD1 Callithrix jacchus ENSCJAG00000010263 I
ENSCSAVG00000007634 Ciona savignyi ENSCSAVG00000007634 I
tead1a Danio rerio ENSDARG00000028159 I
tead1b Danio rerio ENSDARG00000059483 I
TEAD4 Dasypus novemcinctus ENSDNOG00000030589 I
ENSDORG00000004435 Dipodomys ordii ENSDORG00000004435 I
Tead3 Dipodomys ordii ENSDORG00000010798 I
TEAD1 Equus caballus ENSECAG00000008332 I
TEAD3 Equus caballus ENSECAG00000015056 I
ENSEEUG00000001836 Erinaceus europaeus ENSEEUG00000001836 I
TEAD2 Erinaceus europaeus ENSEEUG00000012244 I
ENSFALG00000003635 Ficedula albicollis ENSFALG00000003635 I
TEAD1 Homo sapiens ENSG00000187079 D
TEAD4 Homo sapiens ENSG00000197905 D
tead1a Gasterosteus aculeatus ENSGACG00000003385 I
tead3a Gasterosteus aculeatus ENSGACG00000009758 I
tead1b Gasterosteus aculeatus ENSGACG00000015715 I
ENSGALG00000000953 Gallus gallus ENSGALG00000000953 I
TEAD1 Gallus gallus ENSGALG00000005415 I
TEAD3 Gorilla gorilla ENSGGOG00000001847 I
ENSGMOG00000010731 Gadus morhua ENSGMOG00000010731 I
ENSGMOG00000015271 Gadus morhua ENSGMOG00000015271 I
ENSLACG00000013349 Latimeria chalumnae ENSLACG00000013349 I
ENSLACG00000016444 Latimeria chalumnae ENSLACG00000016444 I
TEAD3 Loxodonta africana ENSLAFG00000014818 I
TEAD1 Loxodonta africana ENSLAFG00000016484 I
ENSLOCG00000004054 Lepisosteus oculatus ENSLOCG00000004054 I
ENSLOCG00000009736 Lepisosteus oculatus ENSLOCG00000009736 I
TEAD1 Meleagris gallopavo ENSMGAG00000005493 I
TEAD4 Meleagris gallopavo ENSMGAG00000013910 I
TEAD3 Microcebus murinus ENSMICG00000000029 I
TEAD1 Microcebus murinus ENSMICG00000007178 I
TEAD4 Macaca mulatta ENSMMUG00000011299 I
TEAD3 Macaca mulatta ENSMMUG00000015909 I
ENSMPUG00000003624 Mustela putorius furo ENSMPUG00000003624 I
Tead4 Mus musculus ENSMUSG00000030353 D
Tead2 Mus musculus ENSMUSG00000030796 D
Tead1 Mus musculus ENSMUSG00000055320 D
ENSNLEG00000008666 Nomascus leucogenys ENSNLEG00000008666 I
TEAD4 Ornithorhynchus anatinus ENSOANG00000001389 I
ENSOARG00000012126 Ovis aries ENSOARG00000012126 I
TEAD3 Otolemur garnettii ENSOGAG00000002943 I
ENSONIG00000011013 Oreochromis niloticus ENSONIG00000011013 I
ENSONIG00000014698 Oreochromis niloticus ENSONIG00000014698 I
TEAD4 Oryzias latipes ENSORLG00000002553 I
tead1b Oryzias latipes ENSORLG00000007439 I
tead3a Oryzias latipes ENSORLG00000008361 I
ENSP00000349828 Macaca fascicularis ENSP00000349828 I
ENSPANG00000018522 Papio anubis ENSPANG00000018522 I
TEAD3 Procavia capensis ENSPCAG00000010213 I
TEAD4 Procavia capensis ENSPCAG00000013738 I
ENSPFOG00000003170 Poecilia formosa ENSPFOG00000003170 I
ENSPFOG00000013997 Poecilia formosa ENSPFOG00000013997 I
ENSPPYG00000016530 Pongo abelii ENSPPYG00000016530 I
ENSPSIG00000006176 Pelodiscus sinensis ENSPSIG00000006176 I
TEAD3 Pan troglodytes ENSPTRG00000018086 I
TEAD1 Pteropus vampyrus ENSPVAG00000001503 I
TEAD3 Pteropus vampyrus ENSPVAG00000002764 I
Tead1 Rattus norvegicus ENSRNOG00000015488 I
TEAD3 Sorex araneus ENSSARG00000008305 I
ENSSHAG00000015930 Sarcophilus harrisii ENSSHAG00000015930 I
TEAD2 Sus scrofa ENSSSCG00000025568 I
ENSSTOG00000010621 Ictidomys tridecemlineatus ENSSTOG00000010621 I
TEAD3 Taeniopygia guttata ENSTGUG00000001691 I
tead1a Takifugu rubripes ENSTRUG00000005940 I
tead3a Takifugu rubripes ENSTRUG00000011546 I
TEAD4 Takifugu rubripes ENSTRUG00000016489 I
tead3b Takifugu rubripes ENSTRUG00000018177 I
ENSTSYG00000006048 Tarsius syrichta ENSTSYG00000006048 I
TEAD3 Tursiops truncatus ENSTTRG00000009434 I
e_gw.291.69.1 Branchiostoma floridae e_gw.291.69.1 I
sd Drosophila melanogaster FBgn0003345 D
GA21152 Drosophila pseudoobscura FBgn0081140 I
GH12522 Drosophila grimshawi FBgn0120001 I
GI14876 Drosophila mojavensis FBgn0137627 I
GL22923 Drosophila persimilis FBgn0160513 I
GM22588 Drosophila sechellia FBgn0177458 I
GJ19539 Drosophila virilis FBgn0206682 I
GE17227 Drosophila yakuba FBgn0234705 I
HelroG146479 Helobdella robusta HelroG146479 I
HHAL001589-PA Halyomorpha halys HHAL001589-PA I
LCUP007338 Lucilia cuprina LCUP007338 I
MDOA005382 Musca domestica MDOA005382 I
Myotis_brandtii_TEAD3_10017764 Myotis brandtii Myotis_brandtii_TEAD3_10017764 I
NEMVEDRAFT_v1g86806 Nematostella vectensis NEMVEDRAFT_v1g86806 I
nRc.2.0.1.g07693 Romanomermis culicivorax nRc.2.0.1.g07693 I
Ocbimv22038895m.g Octopus bimaculoides Ocbimv22038895m.g N
OFLC_0000413701 Onchocerca flexuosa OFLC_0000413701 I
Ogr10124 Ophisaurus gracilis Ogr10124 I
PPAI001408 Phlebotomus papatasi PPAI001408 I
Pvit_05988 Pogona vitticeps Pvit_05988 I
SMAR011013 Strigamia maritima SMAR011013 I
SMAR013465 Strigamia maritima SMAR013465 I
SMRZ_0002317401 Schistosoma margrebowiei SMRZ_0002317401 I
SMTD_0001953201 Schistosoma mattheei SMTD_0001953201 I
SROB_0002407501 Schistosoma rodhaini SROB_0002407501 I
TC030781 Tribolium castaneum TC030781 I
TsM_000210300 Taenia solium TsM_000210300 I
egl-44 Caenorhabditis elegans WBGene00001208 I
tead1 Xenopus tropicalis XB-GENE-5909149 I
XP_002943057 Xenopus tropicalis XP_002943057 I
YQE_09490 Dendroctonus ponderosae YQE_09490 I