Cmyd_10005963 (Chelonia mydas)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Cmyd_10005963 T015886_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.785 1.000
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.695 0.895
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.695 0.895
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.695 0.895
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.695 0.895
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.695 0.895
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.695 0.895
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.675 0.488
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.657 0.756
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.644 0.791
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.644 0.791
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.644 0.791
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.644 0.791
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.621 0.686
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.508 0.419
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.372
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10005963 ARID/BRIGHT 244 330

Links

Other ARID/BRIGHT family TFs
Other Chelonia mydas TFs

364 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R006597 Calypte anna Aan_R006597 N
ACHR008952 Anopheles christyi ACHR008952 I
AEPI008594 Anopheles epiroticus AEPI008594 I
Afo_R014607 Aptenodytes forsteri Afo_R014607 N
AGAP000512 Anopheles gambiae AGAP000512 I
Alligator_sinensis_CCG011289.1 Alligator sinensis Alligator_sinensis_CCG011289.1 I
Alligator_sinensis_CCG020461.1 Alligator sinensis Alligator_sinensis_CCG020461.1 I
Aqu1.216869 Amphimedon queenslandica Aqu1.216869 I
BGIBMGA001129 Bombyx mori BGIBMGA001129 I
CBG02541 Caenorhabditis briggsae CBG02541 I
Cmyd_10009267 Chelonia mydas Cmyd_10009267 I
CPIJ013490 Culex quinquefasciatus CPIJ013490 I
CpipJ_CPIJ013490 Culex pipiens CpipJ_CPIJ013490 I
D917_06432 Trichinella nativa D917_06432 I
D918_02241 Trichuris suis D918_02241 I
ECANG7_01760 Echinococcus canadensis ECANG7_01760 I
EFV53558 Trichinella spiralis EFV53558 I
TEAD1 Anolis carolinensis ENSACAG00000004642 I
ENSAMXG00000010081 Astyanax mexicanus ENSAMXG00000010081 I
ENSAPLG00000016417 Anas platyrhynchos ENSAPLG00000016417 N
TEAD1 Bos taurus ENSBTAG00000032657 N
TEAD3 Canis familiaris ENSCAFG00000001326 I
TEAD1 Canis familiaris ENSCAFG00000007976 I
ENSCING00000019408 Ciona intestinalis ENSCING00000019408 I
TEAD1 Callithrix jacchus ENSCJAG00000010263 I
ENSCJAG00000018829 Callithrix jacchus ENSCJAG00000018829 I
TEAD1 Cavia porcellus ENSCPOG00000001830 N
ENSCSAG00000004676 Chlorocebus sabaeus ENSCSAG00000004676 I
ENSCSAVG00000007634 Ciona savignyi ENSCSAVG00000007634 I
tead1a Danio rerio ENSDARG00000028159 I
tead1b Danio rerio ENSDARG00000059483 I
tead3b Danio rerio ENSDARG00000063649 I
TEAD4 Dasypus novemcinctus ENSDNOG00000030589 I
Tead3 Dipodomys ordii ENSDORG00000010798 I
TEAD1 Equus caballus ENSECAG00000008332 I
TEAD3 Equus caballus ENSECAG00000015056 I
TEAD1 Echinops telfairi ENSETEG00000009056 N
ENSFALG00000003635 Ficedula albicollis ENSFALG00000003635 I
TEAD3 Felis catus ENSFCAG00000012905 I
TEAD3 Homo sapiens ENSG00000007866 D
TEAD1 Homo sapiens ENSG00000187079 D
TEAD4 Homo sapiens ENSG00000197905 D
tead3a Gasterosteus aculeatus ENSGACG00000009758 I
tead1b Gasterosteus aculeatus ENSGACG00000015715 I
ENSGALG00000000953 Gallus gallus ENSGALG00000000953 I
TEAD3 Gorilla gorilla ENSGGOG00000001847 I
TEAD1 Gorilla gorilla ENSGGOG00000003412 N
ENSGMOG00000015271 Gadus morhua ENSGMOG00000015271 I
ENSLACG00000016444 Latimeria chalumnae ENSLACG00000016444 I
ENSLACG00000016717 Latimeria chalumnae ENSLACG00000016717 N
TEAD3 Loxodonta africana ENSLAFG00000014818 I
TEAD1 Loxodonta africana ENSLAFG00000016484 I
ENSLOCG00000004054 Lepisosteus oculatus ENSLOCG00000004054 I
ENSLOCG00000009736 Lepisosteus oculatus ENSLOCG00000009736 I
TEAD4 Meleagris gallopavo ENSMGAG00000013910 I
TEAD3 Microcebus murinus ENSMICG00000000029 I
TEAD1 Microcebus murinus ENSMICG00000007178 I
TEAD1 Myotis lucifugus ENSMLUG00000009137 I
TEAD1 Macaca mulatta ENSMMUG00000010875 N
TEAD3 Macaca mulatta ENSMMUG00000015909 I
TEAD1 Monodelphis domestica ENSMODG00000008613 I
ENSMPUG00000013114 Mustela putorius furo ENSMPUG00000013114 I
Tead4 Mus musculus ENSMUSG00000030353 D
Tead1 Mus musculus ENSMUSG00000055320 D
ENSNLEG00000017672 Nomascus leucogenys ENSNLEG00000017672 N
TEAD2 Ornithorhynchus anatinus ENSOANG00000013933 N
ENSOANG00000021775 Ornithorhynchus anatinus ENSOANG00000021775 N
ENSOARG00000008069 Ovis aries ENSOARG00000008069 I
ENSOARG00000012126 Ovis aries ENSOARG00000012126 I
TEAD1 Oryctolagus cuniculus ENSOCUG00000007955 I
TEAD3 Otolemur garnettii ENSOGAG00000002943 I
TEAD4 Oryzias latipes ENSORLG00000002553 I
ENSP00000355332 Macaca fascicularis ENSP00000355332 N
TEAD1 Procavia capensis ENSPCAG00000013657 I
ENSPFOG00000003170 Poecilia formosa ENSPFOG00000003170 I
ENSPFOG00000013997 Poecilia formosa ENSPFOG00000013997 I
ENSPSIG00000006176 Pelodiscus sinensis ENSPSIG00000006176 I
TEAD3 Pan troglodytes ENSPTRG00000018086 I
TEAD1 Pan troglodytes ENSPTRG00000039896 N
TEAD3 Pteropus vampyrus ENSPVAG00000002764 I
Tead1 Rattus norvegicus ENSRNOG00000015488 I
TEAD1 Sorex araneus ENSSARG00000001748 N
ENSSHAG00000015930 Sarcophilus harrisii ENSSHAG00000015930 I
TEAD3 Taeniopygia guttata ENSTGUG00000001691 I
TEAD1 Taeniopygia guttata ENSTGUG00000015995 N
tead1a Takifugu rubripes ENSTRUG00000005940 I
tead3a Takifugu rubripes ENSTRUG00000011546 I
TEAD4 Takifugu rubripes ENSTRUG00000016489 I
tead1b Takifugu rubripes ENSTRUG00000017473 N
ENSTSYG00000001514 Tarsius syrichta ENSTSYG00000001514 N
TEAD1 Tursiops truncatus ENSTTRG00000006621 N
TEAD3 Tursiops truncatus ENSTTRG00000009434 I
ENSXMAG00000003088 Xiphophorus maculatus ENSXMAG00000003088 N
e_gw.291.69.1 Branchiostoma floridae e_gw.291.69.1 I
sd Drosophila melanogaster FBgn0003345 D
GL22923 Drosophila persimilis FBgn0160513 I
GM22588 Drosophila sechellia FBgn0177458 I
Gfo_R013616 Geospiza fortis Gfo_R013616 N
HelroG146479 Helobdella robusta HelroG146479 I
HHAL001589-PA Halyomorpha halys HHAL001589-PA I
MDOA005382 Musca domestica MDOA005382 I
Myotis_brandtii_TEAD3_10017764 Myotis brandtii Myotis_brandtii_TEAD3_10017764 I
NBR_0001654801 Nippostrongylus brasiliensis NBR_0001654801 I
NBR_0002152001 Nippostrongylus brasiliensis NBR_0002152001 I
NEMVEDRAFT_v1g86806 Nematostella vectensis NEMVEDRAFT_v1g86806 I
Ogr18322 Ophisaurus gracilis Ogr18322 I
PPAI001408 Phlebotomus papatasi PPAI001408 I
Pvit_05988 Pogona vitticeps Pvit_05988 I
Pvit_10291 Pogona vitticeps Pvit_10291 N
SMAR011013 Strigamia maritima SMAR011013 I
TsM_000210300 Taenia solium TsM_000210300 I
egl-44 Caenorhabditis elegans WBGene00001208 I
tead1.S Xenopus laevis XB-GENE-5909161 N