cassava23401.valid.m1 (Manihot esculenta)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 cassava23401.valid.m1 T015953_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.724 0.882
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.629 0.729
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava23401.valid.m1 ARID/BRIGHT 430 515

Links

Other ARID/BRIGHT family TFs
Other Manihot esculenta TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava20622.m1 Manihot esculenta cassava20622.m1 N 0.000
Ciclev10027510m.g Citrus clementina Ciclev10027510m.g N 0.000
evm.TU.supercontig_20.234 Carica papaya evm.TU.supercontig_20.234 N 0.000
Gorai.003G043500 Gossypium raimondii Gorai.003G043500 N 0.000
LjSGA_055593.1 Lotus japonicus LjSGA_055593.1 I 0.000
orange1.1g038853m.g Citrus sinensis orange1.1g038853m.g N 0.000
PRUPE_ppa016118mg Prunus persica PRUPE_ppa016118mg N 0.000
Solyc04g054840.1 Solanum lycopersicum Solyc04g054840.1 N 0.000
VIT_00s0357g00120 Vitis vinifera VIT_00s0357g00120 N 0.000