Eucgr.I01546 (Eucalyptus grandis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Eucgr.I01546 T016096_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.659 0.694
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.607 0.741
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.I01546.1 ARID/BRIGHT 194 279

Links

Other ARID/BRIGHT family TFs
Other Eucalyptus grandis TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACEP25970 Atta cephalotes ACEP25970 N
ACOM023832 Anopheles coluzzii ACOM023832 N
ANCCAN_16550 Ancylostoma caninum ANCCAN_16550 N
BOTBODRAFT_174219 Botryobasidium botryosum BOTBODRAFT_174219 N
BOTBODRAFT_182015 Botryobasidium botryosum BOTBODRAFT_182015 N
Bra015737 Brassica rapa Bra015737 N
CapteG108943 Capitella teleta CapteG108943 N
Cflo_11029--XP_001120115.1_APIME Camponotus floridanus Cflo_11029--XP_001120115.1_APIME N
ENSCJAG00000034027 Callithrix jacchus ENSCJAG00000034027 N
ENSCSAVG00000005880 Ciona savignyi ENSCSAVG00000005880 N
ARID5A Microcebus murinus ENSMICG00000001964 I
ENSNLEG00000007764 Nomascus leucogenys ENSNLEG00000007764 N
ENSOARG00000013883 Ovis aries ENSOARG00000013883 N
ARID5A Sorex araneus ENSSARG00000003004 I
ARID5B Tursiops truncatus ENSTTRG00000009968 N
evm.TU.supercontig_70.18 Carica papaya evm.TU.supercontig_70.18 N
e_gw1.8.356.1 Monosiga brevicollis e_gw1.8.356.1 N
GL12242 Drosophila persimilis FBgn0149849 N
GD20218 Drosophila simulans FBgn0191696 N
gene11760-v1.0-hybrid Fragaria vesca gene11760-v1.0-hybrid N
Genemark.397_g Heterobasidion annosum Genemark.397_g N
Genemark1.2983_g Coccomyxa subellipsoidea C169 Genemark1.2983_g N
Gfo_R015467 Geospiza fortis Gfo_R015467 N
gw1.8.90.1 Volvox carteri gw1.8.90.1 N
HCOI00647600 Haemonchus contortus HCOI00647600 N
HHAL003716-PA Halyomorpha halys HHAL003716-PA N
HPBE_0000220801 Heligmosomoides bakeri HPBE_0000220801 N
Hsal_11763--XP_001120115.1_APIME Harpegnathos saltator Hsal_11763--XP_001120115.1_APIME N
MCINX010724 Melitaea cinxia MCINX010724 N
MESCA003685 Megaselia scalaris MESCA003685 N
MLOC_7381 Hordeum vulgare MLOC_7381 N
NECAME_01264 Necator americanus NECAME_01264 N
OESDEN_17751 Oesophagostomum dentatum OESDEN_17751 N
orange1.1g009744m.g Citrus sinensis orange1.1g009744m.g I 0.696
ORGLA07G0233500 Oryza glaberrima ORGLA07G0233500 N
Pavir.J25952 Panicum virgatum Pavir.J25952 N
PDK_20s1315202g001 Phoenix dactylifera PDK_20s1315202g001 N
PGSC0003DMG400047019 Solanum tuberosum PGSC0003DMG400047019 N
PHACADRAFT_251691 Phanerochaete carnosa PHACADRAFT_251691 N
Pvit_06674 Pogona vitticeps Pvit_06674 N
SBAD_0000429301 Soboliphyme baturini SBAD_0000429301 N
Sjc_0111140 Schistosoma japonicum Sjc_0111140 N
SMTD_0000131801 Schistosoma mattheei SMTD_0000131801 N
SMTD_0001549501 Schistosoma mattheei SMTD_0001549501 N
SPER_0000246801 Spirometra erinaceieuropaei SPER_0000246801 N
SPER_0003392901 Spirometra erinaceieuropaei SPER_0003392901 N
SPER_0003827801 Spirometra erinaceieuropaei SPER_0003827801 N
SPU_003500 Strongylocentrotus purpuratus SPU_003500 N
SROB_0001561301 Schistosoma rodhaini SROB_0001561301 N
SVUK_0000804601 Strongylus vulgaris SVUK_0000804601 N
TELCIR_22728 Teladorsagia circumcincta TELCIR_22728 N
TRE_0000846701 Trichobilharzia regenti TRE_0000846701 N
TRIUR3_29596 Triticum urartu TRIUR3_29596 N
YQE_11989 Dendroctonus ponderosae YQE_11989 N