gene17116-v1.0-hybrid (Fragaria vesca)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 gene17116-v1.0-hybrid T016112_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.718 0.765
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.591 0.753
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna17116.1-v1.0-hybrid ARID/BRIGHT 561 646

Links

Other ARID/BRIGHT family TFs
Other Fragaria vesca TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANIA_01134 Aspergillus nidulans CADANIAG00001495 N
COCC4DRAFT_71230 Bipolaris maydis COCC4DRAFT_71230 I
COCCADRAFT_5667 Bipolaris zeicola COCCADRAFT_5667 I
COCMIDRAFT_102049 Bipolaris oryzae COCMIDRAFT_102049 I
COCSADRAFT_76883 Bipolaris sorokiniana COCSADRAFT_76883 I
COCVIDRAFT_27956 Bipolaris victoriae COCVIDRAFT_27956 I
COCVIDRAFT_37179 Bipolaris victoriae COCVIDRAFT_37179 I
estExt_fgenesh1_pg.C_40955 Cryphonectria parasitica estExt_fgenesh1_pg.C_40955 I
estExt_Genewise1.C_80993 Neurospora discreta estExt_Genewise1.C_80993 I
estExt_Genewise1Plus.C_150252 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_150252 I
estExt_Genewise1Plus.C_50594 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_50594 I
F503_06755 Ophiostoma piceae uamh F503_06755 I
fgenesh1_pg.C_scaffold_40000014 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_40000014 I
GGTG_00383 Gaeumannomyces graminis GGTG_00383 I
GLRG_07125 Colletotrichum graminicola GLRG_07125 I
LEMA_P062270.1 Leptosphaeria maculans LEMA_P062270.1 I
MAPG_07478 Magnaporthe poae MAPG_07478 I
MGG_07777 Magnaporthe oryzae MGG_07777 I
MYCFIDRAFT_170117 Pseudocercospora fijiensis MYCFIDRAFT_170117 I
MYCTH_2067244 Myceliophthora thermophila MYCTH_2067244 I
qa-1F Neurospora crassa NCU06028 D
NEUTE1DRAFT_147986 Neurospora tetrasperma NEUTE1DRAFT_147986 I
PFICI_15081 Pestalotiopsis fici PFICI_15081 I
PODANS_5_5100 Podospora anserina PODANS_5_5100 I
PTT_06800 Pyrenophora teres PTT_06800 I
PV09_01109 Verruconis gallopava PV09_01109 I
PVAR5_3766 Byssochlamys spectabilis PVAR5_3766 I
SETTUDRAFT_140992 Setosphaeria turcica SETTUDRAFT_140992 I
SMAC_07407 Sordaria macrospora SMAC_07407 I
SPBR_06572 Sporothrix brasiliensis SPBR_06572 I
THITE_2116895 Thielavia terrestris THITE_2116895 I
UCRNP2_4108 Neofusicoccum parvum UCRNP2_4108 I
VDAG_08177 Verticillium dahliae VDAG_08177 I
VDBG_08512 Verticillium alfalfae VDBG_08512 I
VDBG_08512 Verticillium albo atrum VDBG_08512 I
W97_04550 Coniosporium apollinis W97_04550 I