TMUE_s0285000200 (Trichuris muris)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 TMUE_s0285000200 T016746_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.757 0.860
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.757 0.860
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.757 0.860
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.757 0.860
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.757 0.860
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.757 0.860
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.747 0.860
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.720 0.826
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.720 0.826
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.720 0.826
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.720 0.826
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.707 0.500
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.697 0.709
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.695 0.826
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.540 0.407
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.360
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TMUE_s0285000200 ARID/BRIGHT 307 393

Links

Other ARID/BRIGHT family TFs
Other Trichuris muris TFs

368 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000014011 Ailuropoda melanoleuca ENSAMEG00000014011 N
ENSBTAG00000047871 Bos taurus ENSBTAG00000047871 N
ENSBTAP00000036194-D2 Bos grunniens ENSBTAP00000036194-D2 N
KLF17 Canis familiaris ENSCAFG00000004819 N
KLF17 Choloepus hoffmanni ENSCHOG00000010846 N
ENSCPOG00000000188 Cavia porcellus ENSCPOG00000000188 I
ENSDNOG00000006622 Dasypus novemcinctus ENSDNOG00000006622 N
ENSDNOG00000046894 Dasypus novemcinctus ENSDNOG00000046894 N
ENSDORG00000005236 Dipodomys ordii ENSDORG00000005236 N
KLF17 Equus caballus ENSECAG00000002073 N
KLF17 Felis catus ENSFCAG00000022786 N
ENSMLUG00000000160 Myotis lucifugus ENSMLUG00000000160 N
ENSMLUG00000023723 Myotis lucifugus ENSMLUG00000023723 N
ENSMPUG00000013569 Mustela putorius furo ENSMPUG00000013569 N
ENSOARG00000000759 Ovis aries ENSOARG00000000759 N
KLF17 Oryctolagus cuniculus ENSOCUG00000003171 N
KLF17 Pteropus vampyrus ENSPVAG00000015329 N
KLF17 Tursiops truncatus ENSTTRG00000013114 I
KLF17 Vicugna pacos ENSVPAG00000004627 I
Myotis_brandtii_KLF17_10003752 Myotis brandtii Myotis_brandtii_KLF17_10003752 N