CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

DAPPUDRAFT_107480 *(Daphnia pulex)* AT hook
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02178 (AT_hook)	IPR017956	DAPPUDRAFT_107480	T017343_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TVAG_474020 M01106_2.00	Trichomonas vaginalis	DNWWWAWW	WWTWWWNH	PBM Lambert et al.(2019) pTH11493	0.991	0.560
BRADI3G55950 M01673_2.00	Brachypodium distachyon	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH9369	0.991	0.520
OS02G0824300 M01688_2.00	Oryza sativa	NNDWAWWN	NWWTWHNN	PBM Weirauch et al.(2014) pTH8406	0.991	0.520
AHL13 M01672_2.00	Arabidopsis thaliana	NAWWTAWWWN	NWWWTAWWTN	PBM Weirauch et al.(2014) pTH8202	0.991	0.480
FGRRES_17512 M01105_2.00	Fusarium graminearum	NNNDNWWWW	WWWWNHNNN	PBM Lambert et al.(2019) pTH11412	0.991	0.480
VIT_08s0007g04020 M01689_2.00	Vitis vinifera	DBNDDDDDDN	NHHHHHHNVH	PBM Weirauch et al.(2014) pTH9295	0.991	0.480
SUM1 M00008_2.00	Saccharomyces cerevisiae	NNDWWWH	DWWWHNN	PBM Badis et al.(2008) SUM1_2124	0.991	0.480
Q7DLU9_PEA M09772_2.00	Pisum sativum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$HMGIY_01	0.991	0.480
SUM1 M07439_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0398.1	0.991	0.462
SUM1 M08478_2.00	Saccharomyces cerevisiae	RYGWCASWAAW	WTTWSTGWCRY	Misc DeBoer et al.(2011) YDR310C_383	0.991	0.462
SUM1 M08479_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	Misc DeBoer et al.(2011) YDR310C_478	0.991	0.462
ANIA_01690 M01675_2.00	Aspergillus nidulans	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH8216	0.991	0.378
ENSPPYG00000004736 M01685_2.00	Pongo abelii	NNNNDWWW	WWWHNNNN	PBM Weirauch et al.(2014) pTH9279	0.991	0.368
Hmga2 M00751_2.00	Mus musculus	NNNNRHWWNN	NNWWDYNNNN	PBM Weirauch et al.(2013) pTH3046	0.991	0.359
HMGA2 M09771_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGA2_01	0.991	0.359
HMGA1 M09769_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_01	0.991	0.359
HMGA1 M09770_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_Q4	0.991	0.359
BRADI5G22430 M01674_2.00	Brachypodium distachyon	VNRDDDHDD	HHDHHHYNB	PBM Weirauch et al.(2014) pTH9242	0.991	0.320
ATEG_07399 M01676_2.00	Aspergillus terreus	DHNNHNDWWW	WWWHNDNNDH	PBM Weirauch et al.(2014) pTH9237	0.991	0.320
kmt2cb M01679_2.00	Danio rerio	WWAWAWAT	ATWTWTWW	PBM Weirauch et al.(2014) pTH7876	0.991	0.320
Ahctf1 M00750_2.00	Mus musculus	AAAWAWAW	ATWTWTTT	PBM Weirauch et al.(2013) pTH2361	0.991	0.320
FGRRES_05233 M01104_2.00	Fusarium graminearum	NNNDWWAWWH	DWWTWWHNNN	PBM Lambert et al.(2019) pTH11377	0.991	0.308
NCU05635 M01694_2.00	Neurospora crassa	NNNWWWWNNN	NNNWWWWNNN	PBM Weirauch et al.(2014) pTH8863	0.991	0.289
ENSACAG00000014978 M01677_2.00	Anolis carolinensis	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9222	0.991	0.280
phf21ab M01678_2.00	Danio rerio	NNNDNADW	WHTNHNNN	PBM Weirauch et al.(2014) pTH9254	0.991	0.280
phf21ab M01680_2.00	Gasterosteus aculeatus	AAAAWAAA	TTTWTTTT	PBM Weirauch et al.(2014) pTH9180	0.991	0.280
PHF21A M01681_2.00	Meleagris gallopavo	HDNHNNDNHD	HDNHNNDNHD	PBM Weirauch et al.(2014) pTH7875	0.991	0.280
PHF21A M01103_2.00	Monodelphis domestica	NNNAWATWAATN	NATTWATWTNNN	PBM Lambert et al.(2019) pTH9309	0.991	0.280
PHF21A M01682_2.00	Monodelphis domestica	NNNNNHRH	DYDNNNNN	PBM Weirauch et al.(2014) pTH9335	0.991	0.280
Phf21a M01684_2.00	Mus musculus	NNNATATWAATN	NATTWATATNNN	PBM Weirauch et al.(2014) pTH8550	0.991	0.280
estExt_fgeneshNG_pg.C_820014 M01692_2.00	Naegleria gruberi	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9380	0.991	0.280
PK26376.1 M01108_2.00	Cannabis sativa	DDWWWAWW	WWTWWWHH	PBM Lambert et al.(2019) pTH11261	0.991	0.280
NCU01145 M01693_2.00	Neurospora crassa	RWATAWWTNN	NNAWWTATWY	PBM Weirauch et al.(2014) pTH8916	0.991	0.242
Xrp1 M01686_2.00	Drosophila melanogaster	NNNNDWAWW	WWTWHNNNN	PBM Weirauch et al.(2014) pTH9260	0.991	0.240
MTR_4g101990 M01687_2.00	Medicago truncatula	AAAWTAAT	ATTAWTTT	PBM Weirauch et al.(2014) pTH9209	0.991	0.240
PK00377.1 M01107_2.00	Cannabis sativa	DAWWWAWW	WWTWWWTH	PBM Lambert et al.(2019) pTH11338	0.991	0.240
Xrp1 M05900_2.00	Drosophila melanogaster	RTKRYGYAAT	ATTRCRYMAY	B1H Zhu et al.(2011) Xrp1_CG6272_SANGER_5_FBgn0261113	0.991	0.240
HMGA M01671_2.00	Arabidopsis thaliana	NNNNDWAWH	DWTWHNNNN	PBM Weirauch et al.(2014) pTH7395	0.991	0.231
HMG-I Y M02652_2.00	Pisum sativum	NDWVAAANRVMRWMAY	RTKWYKBYNTTTBWHN	SELEX Mathelier et al.(2014) MA0045.1	0.991	0.231
Setbp1 M01683_2.00	Mus musculus	NDNNNNNNHN	NDNNNNNNHN	PBM Weirauch et al.(2014) pTH1294	0.991	0.200
athp-3 M01691_2.00	Caenorhabditis elegans	NNDDWDH	DHWHHNN	PBM Weirauch et al.(2014) pTH9097	0.991	0.177
hmg-12 M01690_2.00	Caenorhabditis elegans	NNAWWTAWWTNN	NNAWWTAWWTNN	PBM Weirauch et al.(2014) pTH8997	0.991	0.123
SUM1 M01517_2.00	Saccharomyces cerevisiae	NNNDWAWW	WWTWHNNN	PBM Zhu et al.(2009) Sum1	0.991	0.000
For this family, TFs with SR scores > 0.990* will likely have a similar motif*