CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

fgenesh1_pg.C_scaffold_4000555 *(Phanerochaete chrysosporium)* AT hook
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF02178 (AT_hook)	IPR017956	fgenesh1_pg.C_scaffold_4000555	T017957_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HMGA M01671_2.00	Arabidopsis thaliana	NNNNDWAWH	DWTWHNNNN	PBM Weirauch et al.(2014) pTH7395	0.991	0.520
HMG-I Y M02652_2.00	Pisum sativum	NDWVAAANRVMRWMAY	RTKWYKBYNTTTBWHN	SELEX Mathelier et al.(2014) MA0045.1	0.991	0.500
NCU01145 M01693_2.00	Neurospora crassa	RWATAWWTNN	NNAWWTATWY	PBM Weirauch et al.(2014) pTH8916	0.991	0.452
NCU05635 M01694_2.00	Neurospora crassa	NNNWWWWNNN	NNNWWWWNNN	PBM Weirauch et al.(2014) pTH8863	0.991	0.440
FGRRES_05233 M01104_2.00	Fusarium graminearum	NNNDWWAWWH	DWWTWWHNNN	PBM Lambert et al.(2019) pTH11377	0.991	0.420
athp-3 M01691_2.00	Caenorhabditis elegans	NNDDWDH	DHWHHNN	PBM Weirauch et al.(2014) pTH9097	0.991	0.419
ANIA_01690 M01675_2.00	Aspergillus nidulans	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH8216	0.991	0.400
HMGA1 M09769_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_01	0.991	0.380
HMGA1 M09770_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_Q4	0.991	0.380
Hmga2 M00751_2.00	Mus musculus	NNNNRHWWNN	NNWWDYNNNN	PBM Weirauch et al.(2013) pTH3046	0.991	0.360
ENSPPYG00000004736 M01685_2.00	Pongo abelii	NNNNDWWW	WWWHNNNN	PBM Weirauch et al.(2014) pTH9279	0.991	0.360
HMGA2 M09771_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGA2_01	0.991	0.360
FGRRES_17512 M01105_2.00	Fusarium graminearum	NNNDNWWWW	WWWWNHNNN	PBM Lambert et al.(2019) pTH11412	0.991	0.320
TVAG_474020 M01106_2.00	Trichomonas vaginalis	DNWWWAWW	WWTWWWNH	PBM Lambert et al.(2019) pTH11493	0.991	0.320
BRADI3G55950 M01673_2.00	Brachypodium distachyon	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH9369	0.991	0.300
OS02G0824300 M01688_2.00	Oryza sativa	NNDWAWWN	NWWTWHNN	PBM Weirauch et al.(2014) pTH8406	0.991	0.300
VIT_08s0007g04020 M01689_2.00	Vitis vinifera	DBNDDDDDDN	NHHHHHHNVH	PBM Weirauch et al.(2014) pTH9295	0.991	0.300
hmg-12 M01690_2.00	Caenorhabditis elegans	NNAWWTAWWTNN	NNAWWTAWWTNN	PBM Weirauch et al.(2014) pTH8997	0.991	0.284
AHL13 M01672_2.00	Arabidopsis thaliana	NAWWTAWWWN	NWWWTAWWTN	PBM Weirauch et al.(2014) pTH8202	0.991	0.280
SUM1 M00008_2.00	Saccharomyces cerevisiae	NNDWWWH	DWWWHNN	PBM Badis et al.(2008) SUM1_2124	0.991	0.280
Q7DLU9_PEA M09772_2.00	Pisum sativum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$HMGIY_01	0.991	0.260
SUM1 M07439_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0398.1	0.991	0.240
SUM1 M08478_2.00	Saccharomyces cerevisiae	RYGWCASWAAW	WTTWSTGWCRY	Misc DeBoer et al.(2011) YDR310C_383	0.991	0.240
SUM1 M08479_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	Misc DeBoer et al.(2011) YDR310C_478	0.991	0.240
BRADI5G22430 M01674_2.00	Brachypodium distachyon	VNRDDDHDD	HHDHHHYNB	PBM Weirauch et al.(2014) pTH9242	0.991	0.180
phf21ab M01678_2.00	Danio rerio	NNNDNADW	WHTNHNNN	PBM Weirauch et al.(2014) pTH9254	0.991	0.180
PK26376.1 M01108_2.00	Cannabis sativa	DDWWWAWW	WWTWWWHH	PBM Lambert et al.(2019) pTH11261	0.991	0.180
ATEG_07399 M01676_2.00	Aspergillus terreus	DHNNHNDWWW	WWWHNDNNDH	PBM Weirauch et al.(2014) pTH9237	0.991	0.160
ENSACAG00000014978 M01677_2.00	Anolis carolinensis	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9222	0.991	0.160
kmt2cb M01679_2.00	Danio rerio	WWAWAWAT	ATWTWTWW	PBM Weirauch et al.(2014) pTH7876	0.991	0.160
phf21ab M01680_2.00	Gasterosteus aculeatus	AAAAWAAA	TTTWTTTT	PBM Weirauch et al.(2014) pTH9180	0.991	0.160
PHF21A M01681_2.00	Meleagris gallopavo	HDNHNNDNHD	HDNHNNDNHD	PBM Weirauch et al.(2014) pTH7875	0.991	0.160
Setbp1 M01683_2.00	Mus musculus	NDNNNNNNHN	NDNNNNNNHN	PBM Weirauch et al.(2014) pTH1294	0.991	0.160
Ahctf1 M00750_2.00	Mus musculus	AAAWAWAW	ATWTWTTT	PBM Weirauch et al.(2013) pTH2361	0.991	0.160
MTR_4g101990 M01687_2.00	Medicago truncatula	AAAWTAAT	ATTAWTTT	PBM Weirauch et al.(2014) pTH9209	0.991	0.160
PK00377.1 M01107_2.00	Cannabis sativa	DAWWWAWW	WWTWWWTH	PBM Lambert et al.(2019) pTH11338	0.991	0.160
PHF21A M01103_2.00	Monodelphis domestica	NNNAWATWAATN	NATTWATWTNNN	PBM Lambert et al.(2019) pTH9309	0.991	0.140
PHF21A M01682_2.00	Monodelphis domestica	NNNNNHRH	DYDNNNNN	PBM Weirauch et al.(2014) pTH9335	0.991	0.140
Phf21a M01684_2.00	Mus musculus	NNNATATWAATN	NATTWATATNNN	PBM Weirauch et al.(2014) pTH8550	0.991	0.140
Xrp1 M01686_2.00	Drosophila melanogaster	NNNNDWAWW	WWTWHNNNN	PBM Weirauch et al.(2014) pTH9260	0.991	0.140
estExt_fgeneshNG_pg.C_820014 M01692_2.00	Naegleria gruberi	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9380	0.991	0.140
Xrp1 M05900_2.00	Drosophila melanogaster	RTKRYGYAAT	ATTRCRYMAY	B1H Zhu et al.(2011) Xrp1_CG6272_SANGER_5_FBgn0261113	0.991	0.140
SUM1 M01517_2.00	Saccharomyces cerevisiae	NNNDWAWW	WWTWHNNN	PBM Zhu et al.(2009) Sum1	0.991	0.020
For this family, TFs with SR scores > 0.990* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
fgenesh1_pg.C_scaffold_4000555	AT hook	324	336	PRPRGRPRKEGGK
fgenesh1_pg.C_scaffold_4000555	AT hook	384	396	PKKRGRPPKASTA
fgenesh1_pg.C_scaffold_4000555	AT hook	413	425	VKKRGRPRKSPVE
fgenesh1_pg.C_scaffold_4000555	AT hook	503	513	KRGRGRPRKAE

Links
Other AT hook family TFs
Other *Phanerochaete chrysosporium* TFs

1072 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Alligator_sinensis_CCG003455.1	Alligator sinensis	Alligator_sinensis_CCG003455.1	I	0.000
Cmyd_10007335	Chelonia mydas	Cmyd_10007335	I	0.000
ENSAMEG00000006419	Ailuropoda melanoleuca	ENSAMEG00000006419	I	0.000
ENSAMXG00000001207	Astyanax mexicanus	ENSAMXG00000001207	I	0.000
ZBTB3	Bos taurus	ENSBTAG00000021329	I	0.000
ENSBTAP00000051139-D1	Bos grunniens	ENSBTAP00000051139-D1	I	0.000
ZBTB3	Canis familiaris	ENSCAFG00000015650	I	0.000
ZBTB3	Choloepus hoffmanni	ENSCHOG00000012845	I	0.000
ZBTB3	Callithrix jacchus	ENSCJAG00000018693	I	0.000
ZBTB3	Cavia porcellus	ENSCPOG00000011665	I	0.000
ENSCSAG00000006712	Chlorocebus sabaeus	ENSCSAG00000006712	I	0.000
zbtb3	Danio rerio	ENSDARG00000036235	I	0.000
ENSDNOG00000006546	Dasypus novemcinctus	ENSDNOG00000006546	I	0.000
ZBTB3	Dasypus novemcinctus	ENSDNOG00000043011	I	0.000
Zbtb3	Dipodomys ordii	ENSDORG00000015697	I	0.000
ZBTB3	Felis catus	ENSFCAG00000027690	I	0.000
ZBTB3	Homo sapiens	ENSG00000185670	I	0.000
zbtb3	Gasterosteus aculeatus	ENSGACG00000016930	I	0.000
ZBTB3	Gorilla gorilla	ENSGGOG00000011735	I	0.000
ENSLACG00000006879	Latimeria chalumnae	ENSLACG00000006879	I	0.000
ENSLOCG00000001327	Lepisosteus oculatus	ENSLOCG00000001327	I	0.000
ENSMEUG00000015659	Macropus eugenii	ENSMEUG00000015659	I	0.000
ZBTB3	Microcebus murinus	ENSMICG00000009961	I	0.000
ZBTB3	Myotis lucifugus	ENSMLUG00000011020	I	0.000
ENSMMUG00000014369	Macaca mulatta	ENSMMUG00000014369	I	0.000
ENSMODG00000007952	Monodelphis domestica	ENSMODG00000007952	I	0.000
ENSMPUG00000013694	Mustela putorius furo	ENSMPUG00000013694	I	0.000
Zbtb3	Mus musculus	ENSMUSG00000071661	D	0.000
ENSNLEG00000004096	Nomascus leucogenys	ENSNLEG00000004096	I	0.000
ENSOANG00000001309	Ornithorhynchus anatinus	ENSOANG00000001309	I	0.000
ENSOARG00000016929	Ovis aries	ENSOARG00000016929	I	0.000
ZBTB3	Oryctolagus cuniculus	ENSOCUG00000008921	I	0.000
ZBTB3	Otolemur garnettii	ENSOGAG00000011414	I	0.000
ENSONIG00000005336	Oreochromis niloticus	ENSONIG00000005336	I	0.000
zbtb3	Oryzias latipes	ENSORLG00000002503	N	0.000
ENSP00000378286	Macaca fascicularis	ENSP00000378286	I	0.000
ENSPANG00000008469	Papio anubis	ENSPANG00000008469	I	0.000
ENSPFOG00000009453	Poecilia formosa	ENSPFOG00000009453	I	0.000
ENSPPYG00000003148	Pongo abelii	ENSPPYG00000003148	I	0.000
ENSPSIG00000001786	Pelodiscus sinensis	ENSPSIG00000001786	I	0.000
ZBTB3	Pan troglodytes	ENSPTRG00000003785	I	0.000
ZBTB3	Pteropus vampyrus	ENSPVAG00000003477	I	0.000
Zbtb3	Rattus norvegicus	ENSRNOG00000019461	I	0.000
ENSSSCG00000025351	Sus scrofa	ENSSSCG00000025351	I	0.000
ENSSTOG00000027839	Ictidomys tridecemlineatus	ENSSTOG00000027839	I	0.000
zbtb3	Tetraodon nigroviridis	ENSTNIG00000003382	I	0.000
zbtb3	Takifugu rubripes	ENSTRUG00000013773	I	0.000
ZBTB3	Tursiops truncatus	ENSTTRG00000002477	I	0.000
ENSXMAG00000003145	Xiphophorus maculatus	ENSXMAG00000003145	I	0.000
Ogr03307	Ophisaurus gracilis	Ogr03307	I	0.000
Pvit_09391	Pogona vitticeps	Pvit_09391	I	0.000
zbtb3	Xenopus tropicalis	XB-GENE-991962	I	0.000

fgenesh1_pg.C_scaffold_4000555 (Phanerochaete chrysosporium) AT hook

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1072 Related TFs

fgenesh1_pg.C_scaffold_4000555 **(Phanerochaete chrysosporium)
AT hook**