Lus10000315.g (Linum usitatissimum)
AT hook

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02178 (AT_hook) IPR017956 Lus10000315.g T018030_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BRADI3G55950
M01673_2.00 		Brachypodium distachyon
NNNNRHDDN
NHHDYNNNN		 PBM
Weirauch et al.(2014)
pTH9369 		0.991 0.840
OS02G0824300
M01688_2.00 		Oryza sativa
NNDWAWWN
NWWTWHNN		 PBM
Weirauch et al.(2014)
pTH8406 		0.991 0.840
AHL13
M01672_2.00 		Arabidopsis thaliana
NAWWTAWWWN
NWWWTAWWTN		 PBM
Weirauch et al.(2014)
pTH8202 		0.991 0.800
VIT_08s0007g04020
M01689_2.00 		Vitis vinifera
DBNDDDDDDN
NHHHHHHNVH		 PBM
Weirauch et al.(2014)
pTH9295 		0.991 0.720
TVAG_474020
M01106_2.00 		Trichomonas vaginalis
DNWWWAWW
WWTWWWNH		 PBM
Lambert et al.(2019)
pTH11493 		0.991 0.600
FGRRES_17512
M01105_2.00 		Fusarium graminearum
NNNDNWWWW
WWWWNHNNN		 PBM
Lambert et al.(2019)
pTH11412 		0.991 0.520
SUM1
M00008_2.00 		Saccharomyces cerevisiae
NNDWWWH
DWWWHNN		 PBM
Badis et al.(2008)
SUM1_2124 		0.991 0.480
SUM1
M07439_2.00 		Saccharomyces cerevisiae
DWAAATWWN
NWWATTTWH		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1 		0.991 0.462
SUM1
M08478_2.00 		Saccharomyces cerevisiae
RYGWCASWAAW
WTTWSTGWCRY		 Misc
DeBoer et al.(2011)
YDR310C_383 		0.991 0.462
SUM1
M08479_2.00 		Saccharomyces cerevisiae
DWAAATWWN
NWWATTTWH		 Misc
DeBoer et al.(2011)
YDR310C_478 		0.991 0.462
MTR_4g101990
M01687_2.00 		Medicago truncatula
AAAWTAAT
ATTAWTTT		 PBM
Weirauch et al.(2014)
pTH9209 		0.991 0.440
PK00377.1
M01107_2.00 		Cannabis sativa
DAWWWAWW
WWTWWWTH		 PBM
Lambert et al.(2019)
pTH11338 		0.991 0.440
Q7DLU9_PEA
M09772_2.00 		Pisum sativum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HMGIY_01 		0.991 0.440
HMGA1
M09769_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMGIY_01 		0.991 0.385
HMGA1
M09770_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMGIY_Q4 		0.991 0.385
ANIA_01690
M01675_2.00 		Aspergillus nidulans
NNNNRHDDN
NHHDYNNNN		 PBM
Weirauch et al.(2014)
pTH8216 		0.991 0.378
ENSPPYG00000004736
M01685_2.00 		Pongo abelii
NNNNDWWW
WWWHNNNN		 PBM
Weirauch et al.(2014)
pTH9279 		0.991 0.368
BRADI5G22430
M01674_2.00 		Brachypodium distachyon
VNRDDDHDD
HHDHHHYNB		 PBM
Weirauch et al.(2014)
pTH9242 		0.991 0.360
Hmga2
M00751_2.00 		Mus musculus
NNNNRHWWNN
NNWWDYNNNN		 PBM
Weirauch et al.(2013)
pTH3046 		0.991 0.359
HMGA2
M09771_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMGA2_01 		0.991 0.359
Setbp1
M01683_2.00 		Mus musculus
NDNNNNNNHN
NDNNNNNNHN		 PBM
Weirauch et al.(2014)
pTH1294 		0.991 0.320
Ahctf1
M00750_2.00 		Mus musculus
AAAWAWAW
ATWTWTTT		 PBM
Weirauch et al.(2013)
pTH2361 		0.991 0.320
Xrp1
M01686_2.00 		Drosophila melanogaster
NNNNDWAWW
WWTWHNNNN		 PBM
Weirauch et al.(2014)
pTH9260 		0.991 0.320
PK26376.1
M01108_2.00 		Cannabis sativa
DDWWWAWW
WWTWWWHH		 PBM
Lambert et al.(2019)
pTH11261 		0.991 0.320
Xrp1
M05900_2.00 		Drosophila melanogaster
RTKRYGYAAT
ATTRCRYMAY		 B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113 		0.991 0.320
NCU05635
M01694_2.00 		Neurospora crassa
NNNWWWWNNN
NNNWWWWNNN		 PBM
Weirauch et al.(2014)
pTH8863 		0.991 0.316
FGRRES_05233
M01104_2.00 		Fusarium graminearum
NNNDWWAWWH
DWWTWWHNNN		 PBM
Lambert et al.(2019)
pTH11377 		0.991 0.308
ATEG_07399
M01676_2.00 		Aspergillus terreus
DHNNHNDWWW
WWWHNDNNDH		 PBM
Weirauch et al.(2014)
pTH9237 		0.991 0.280
ENSACAG00000014978
M01677_2.00 		Anolis carolinensis
NNNNNDRH
DYHNNNNN		 PBM
Weirauch et al.(2014)
pTH9222 		0.991 0.280
phf21ab
M01678_2.00 		Danio rerio
NNNDNADW
WHTNHNNN		 PBM
Weirauch et al.(2014)
pTH9254 		0.991 0.280
kmt2cb
M01679_2.00 		Danio rerio
WWAWAWAT
ATWTWTWW		 PBM
Weirauch et al.(2014)
pTH7876 		0.991 0.280
phf21ab
M01680_2.00 		Gasterosteus aculeatus
AAAAWAAA
TTTWTTTT		 PBM
Weirauch et al.(2014)
pTH9180 		0.991 0.280
PHF21A
M01681_2.00 		Meleagris gallopavo
HDNHNNDNHD
HDNHNNDNHD		 PBM
Weirauch et al.(2014)
pTH7875 		0.991 0.280
PHF21A
M01103_2.00 		Monodelphis domestica
NNNAWATWAATN
NATTWATWTNNN		 PBM
Lambert et al.(2019)
pTH9309 		0.991 0.280
PHF21A
M01682_2.00 		Monodelphis domestica
NNNNNHRH
DYDNNNNN		 PBM
Weirauch et al.(2014)
pTH9335 		0.991 0.280
Phf21a
M01684_2.00 		Mus musculus
NNNATATWAATN
NATTWATATNNN		 PBM
Weirauch et al.(2014)
pTH8550 		0.991 0.280
estExt_fgeneshNG_pg.C_820014
M01692_2.00 		Naegleria gruberi
NNNNNDRH
DYHNNNNN		 PBM
Weirauch et al.(2014)
pTH9380 		0.991 0.240
HMGA
M01671_2.00 		Arabidopsis thaliana
NNNNDWAWH
DWTWHNNNN		 PBM
Weirauch et al.(2014)
pTH7395 		0.991 0.231
HMG-I Y
M02652_2.00 		Pisum sativum
NDWVAAANRVMRWMAY
RTKWYKBYNTTTBWHN		 SELEX
Mathelier et al.(2014)
MA0045.1 		0.991 0.231
athp-3
M01691_2.00 		Caenorhabditis elegans
NNDDWDH
DHWHHNN		 PBM
Weirauch et al.(2014)
pTH9097 		0.991 0.194
NCU01145
M01693_2.00 		Neurospora crassa
RWATAWWTNN
NNAWWTATWY		 PBM
Weirauch et al.(2014)
pTH8916 		0.991 0.194
hmg-12
M01690_2.00 		Caenorhabditis elegans
NNAWWTAWWTNN
NNAWWTAWWTNN		 PBM
Weirauch et al.(2014)
pTH8997 		0.991 0.136
SUM1
M01517_2.00 		Saccharomyces cerevisiae
NNNDWAWW
WWTWHNNN		 PBM
Zhu et al.(2009)
Sum1 		0.991 0.000
For this family, TFs with SR scores > 0.990 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10000315 AT hook 81 93
Lus10000315 AT hook 143 154

Links

Other AT hook family TFs
Other Linum usitatissimum TFs

1072 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PDP1 Aedes aegypti AAEL005255 I
AALB004300 Anopheles albimanus AALB004300 I
Aan_R004902 Calypte anna Aan_R004902 I
AARA000887 Anopheles arabiensis AARA000887 I
AATE006511 Anopheles atroparvus AATE006511 I
ACEP27179 Atta cephalotes ACEP27179 I
ACOM039838 Anopheles coluzzii ACOM039838 I
ACUA004794 Anopheles culicifacies ACUA004794 I
ACYPI000702 Acyrthosiphon pisum ACYPI000702 I
ADAC004162 Anopheles darlingi ADAC004162 I
ADIR007438 Anopheles dirus ADIR007438 I
AEPI005427 Anopheles epiroticus AEPI005427 I
AFAF017409 Anopheles farauti AFAF017409 I
Afo_R002997 Aptenodytes forsteri Afo_R002997 I
AFUN000141 Anopheles funestus AFUN000141 I
PDP1 Anopheles gambiae AGAP006376 I
Alligator_sinensis_CCG020587.1 Alligator sinensis Alligator_sinensis_CCG020587.1 I
AMEM018156 Anopheles merus AMEM018156 I
AMIN007990 Anopheles minimus AMIN007990 I
AQUA000938 Anopheles quadriannulatus AQUA000938 I
ASIS001542 Anopheles sinensis ASIS001542 I
ASTEI09431 Anopheles stephensi ASTEI09431 I
BGIBMGA003874 Bombyx mori BGIBMGA003874 I
Brh_R008067 Buceros rhinoceros Brh_R008067 I
CapteG151518 Capitella teleta CapteG151518 I
Cflo_03674--XP_391997.2_APIME Camponotus floridanus Cflo_03674--XP_391997.2_APIME I
CGI_10008414 Crassostrea gigas CGI_10008414 I
CLEC008918 Cimex lectularius CLEC008918 I
Cmyd_10013489 Chelonia mydas Cmyd_10013489 I
PDP1 Culex quinquefasciatus CPIJ014920 I
CpipJ_CPIJ014920 Culex pipiens CpipJ_CPIJ014920 I
DAPPUDRAFT_102458 Daphnia pulex DAPPUDRAFT_102458 I
HLF Anolis carolinensis ENSACAG00000017417 I
ENSAMEG00000014714 Ailuropoda melanoleuca ENSAMEG00000014714 I
ENSAMXG00000008798 Astyanax mexicanus ENSAMXG00000008798 I
ENSAMXG00000015442 Astyanax mexicanus ENSAMXG00000015442 I
ENSAMXG00000017639 Astyanax mexicanus ENSAMXG00000017639 I
ENSAPLG00000004386 Anas platyrhynchos ENSAPLG00000004386 I
HLF Bos taurus ENSBTAG00000006618 I
ENSBTAP00000008682-D1 Bos grunniens ENSBTAP00000008682-D1 I
HLF Canis familiaris ENSCAFG00000030851 I
ENSCHOG00000001396 Choloepus hoffmanni ENSCHOG00000001396 I
HLF Callithrix jacchus ENSCJAG00000011298 I
ENSCPOG00000011000 Cavia porcellus ENSCPOG00000011000 I
ENSCSAG00000005557 Chlorocebus sabaeus ENSCSAG00000005557 I
hlfa Danio rerio ENSDARG00000074752 I
ENSDORG00000012644 Dipodomys ordii ENSDORG00000012644 I
HLF Equus caballus ENSECAG00000016953 I
HLF Erinaceus europaeus ENSEEUG00000010964 I
HLF Echinops telfairi ENSETEG00000017670 I
ENSFALG00000002265 Ficedula albicollis ENSFALG00000002265 I
HLF Felis catus ENSFCAG00000022556 I
HLF Homo sapiens ENSG00000108924 D
tefb Gasterosteus aculeatus ENSGACG00000007628 I
hlfb Gasterosteus aculeatus ENSGACG00000010103 I
HLF Gallus gallus ENSGALG00000003059 I
HLF Gorilla gorilla ENSGGOG00000006075 I
ENSGMOG00000004830 Gadus morhua ENSGMOG00000004830 I
ENSLACG00000012701 Latimeria chalumnae ENSLACG00000012701 I
ENSLACG00000012726 Latimeria chalumnae ENSLACG00000012726 I
HLF Loxodonta africana ENSLAFG00000016475 I
ENSLOCG00000011595 Lepisosteus oculatus ENSLOCG00000011595 I
ENSLOCG00000012233 Lepisosteus oculatus ENSLOCG00000012233 I
ENSMEUG00000016384 Macropus eugenii ENSMEUG00000016384 I
ENSMICG00000002860 Microcebus murinus ENSMICG00000002860 I
HLF Myotis lucifugus ENSMLUG00000007393 I
HLF Macaca mulatta ENSMMUG00000022627 I
HLF Monodelphis domestica ENSMODG00000014851 I
ENSMPUG00000015400 Mustela putorius furo ENSMPUG00000015400 I
Hlf Mus musculus ENSMUSG00000003949 D
ENSNLEG00000007993 Nomascus leucogenys ENSNLEG00000007993 I
HLF Ornithorhynchus anatinus ENSOANG00000010288 I
HLF Oryctolagus cuniculus ENSOCUG00000010547 I
HLF Otolemur garnettii ENSOGAG00000007056 I
ENSONIG00000008480 Oreochromis niloticus ENSONIG00000008480 I
ENSONIG00000009563 Oreochromis niloticus ENSONIG00000009563 I
ENSONIG00000019079 Oreochromis niloticus ENSONIG00000019079 I
ENSONIG00000019694 Oreochromis niloticus ENSONIG00000019694 I
HLF Ochotona princeps ENSOPRG00000004195 I
hlfa Oryzias latipes ENSORLG00000000969 I
tefb Oryzias latipes ENSORLG00000014144 I
ENSP00000226067 Macaca fascicularis ENSP00000226067 I
ENSPANG00000022360 Papio anubis ENSPANG00000022360 I
ENSPFOG00000004560 Poecilia formosa ENSPFOG00000004560 I
ENSPFOG00000013950 Poecilia formosa ENSPFOG00000013950 I
ENSPFOG00000016821 Poecilia formosa ENSPFOG00000016821 I
ENSPFOG00000018222 Poecilia formosa ENSPFOG00000018222 I
ENSPPYG00000008257 Pongo abelii ENSPPYG00000008257 I
ENSPSIG00000016356 Pelodiscus sinensis ENSPSIG00000016356 I
HLF Pan troglodytes ENSPTRG00000009424 I
HLF Pteropus vampyrus ENSPVAG00000007461 I
Hlf Rattus norvegicus ENSRNOG00000002456 I
ENSSARG00000013841 Sorex araneus ENSSARG00000013841 I
ENSSHAG00000015304 Sarcophilus harrisii ENSSHAG00000015304 I
ENSSTOG00000029018 Ictidomys tridecemlineatus ENSSTOG00000029018 I
HLF Tupaia belangeri ENSTBEG00000006958 I
HLF Taeniopygia guttata ENSTGUG00000009478 I
ENSTNIG00000003545 Tetraodon nigroviridis ENSTNIG00000003545 I
tefb Takifugu rubripes ENSTRUG00000003565 I
hlfb Takifugu rubripes ENSTRUG00000003909 I
tefa Takifugu rubripes ENSTRUG00000017028 I
ENSTSYG00000009210 Tarsius syrichta ENSTSYG00000009210 I
HLF Tursiops truncatus ENSTTRG00000007194 I
ENSXMAG00000000678 Xiphophorus maculatus ENSXMAG00000000678 I
ENSXMAG00000012903 Xiphophorus maculatus ENSXMAG00000012903 I
ENSXMAG00000016939 Xiphophorus maculatus ENSXMAG00000016939 I
e_gw.24.282.1 Branchiostoma floridae e_gw.24.282.1 I
Pdp1 Drosophila melanogaster FBgn0016694 D
GF24150 Drosophila ananassae FBgn0101144 I
GG14935 Drosophila erecta FBgn0107189 I
GH23565 Drosophila grimshawi FBgn0131022 I
GI12193 Drosophila mojavensis FBgn0134950 I
GL17823 Drosophila persimilis FBgn0155426 I
GM24985 Drosophila sechellia FBgn0179846 I
GD13032 Drosophila simulans FBgn0184754 I
GJ11425 Drosophila virilis FBgn0198683 I
GK10510 Drosophila willistoni FBgn0212525 I
GE20386 Drosophila yakuba FBgn0237702 I
GA28498 Drosophila pseudoobscura FBgn0249858 I
GB43643 Apis mellifera GB43643 I
Gfo_R006518 Geospiza fortis Gfo_R006518 I
HMEL011029 Heliconius melpomene HMEL011029 I
Hsal_12188--XP_391997.2_APIME Harpegnathos saltator Hsal_12188--XP_391997.2_APIME I
ISCW004978 Ixodes scapularis ISCW004978 I
KGM_06258 Danaus plexippus KGM_06258 N
KGM_21614 Danaus plexippus KGM_21614 I
LCUP014933 Lucilia cuprina LCUP014933 I
LLOJ006612 Lutzomyia longipalpis LLOJ006612 I
MCINX004280 Melitaea cinxia MCINX004280 I
MDOA003519 Musca domestica MDOA003519 I
Myotis_brandtii_Hlf_10020713 Myotis brandtii Myotis_brandtii_Hlf_10020713 I
NV13265 Nasonia vitripennis NV13265 I
Ocbimv22024947m.g Octopus bimaculoides Ocbimv22024947m.g I
Ogr00037 Ophisaurus gracilis Ogr00037 I
PHUM426270 Pediculus humanus PHUM426270 I
PPAI002842 Phlebotomus papatasi PPAI002842 I
Pvit_00680 Pogona vitticeps Pvit_00680 I
SMAR002779 Strigamia maritima SMAR002779 I
Tal_R009182 Tyto alba Tal_R009182 I
tetur19g00770 Tetranychus urticae tetur19g00770 I
YQE_01842 Dendroctonus ponderosae YQE_01842 I