POPTR_0009s11170 (Populus trichocarpa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 POPTR_0009s11170 T020881_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.730 0.730
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.730 0.730
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s11170.1 B3 5 98
POPTR_0009s11170.1 B3 277 371
POPTR_0009s11170.2 B3 5 98

Links

Other B3 family TFs
Other Populus trichocarpa TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB001342 Anopheles albimanus AALB001342 N 0.000
AARA011830 Anopheles arabiensis AARA011830 N 0.000
AATE001946 Anopheles atroparvus AATE001946 N 0.000
ACHR007389 Anopheles christyi ACHR007389 N 0.000
ACOM032498 Anopheles coluzzii ACOM032498 N 0.000
ACUA009377 Anopheles culicifacies ACUA009377 N 0.000
AEPI004152 Anopheles epiroticus AEPI004152 N 0.000
AFUN008225 Anopheles funestus AFUN008225 N 0.000
AFUN008244 Anopheles funestus AFUN008244 N 0.000
AFUN011920 Anopheles funestus AFUN011920 N 0.000
AMAM000177 Anopheles maculatus AMAM000177 N 0.000
AMEM007619 Anopheles merus AMEM007619 N 0.000
AMIN001923 Anopheles minimus AMIN001923 N 0.000
AQUA007581 Anopheles quadriannulatus AQUA007581 N 0.000
ASTEI03796 Anopheles stephensi ASTEI03796 N 0.000
CPIJ004430 Culex quinquefasciatus CPIJ004430 N 0.000
CpipJ_CPIJ004430 Culex pipiens CpipJ_CPIJ004430 N 0.000