CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc08g013690.1
(
Solanum lycopersicum
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02362 (B3)
IPR003340
Solyc08g013690.1
T021419_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAV1
M01646_2.00
Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN
PBM
Weirauch et al.(2014)
pTH8592
0.723
0.723
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc08g013690.1.1
B3
53
159
FDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNNKGGLLLNFEDSNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGAGELSKHRLFIDWRRRP
Links
Other
B3
family TFs
Other
Solanum lycopersicum
TFs
297 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ANCCAN_05586
Ancylostoma caninum
ANCCAN_05586
N
0.000
CBG21083
Caenorhabditis briggsae
CBG21083
N
0.000
NBR_0001149301
Nippostrongylus brasiliensis
NBR_0001149301
N
0.000
SVUK_0000060801
Strongylus vulgaris
SVUK_0000060801
N
0.000