Bo3g149640 (Brassica oleracea)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 Bo3g149640 T024530_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC5
M06717_2.00 		Arabidopsis thaliana
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT		 Dap-seq
OMalley et al.(2016)
BPC5_col_a 		0.872 0.872
BPC5
M06718_2.00 		Arabidopsis thaliana
RRRRVNRRGAGARAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTYTCTCYYNBYYYY		 Dap-seq
OMalley et al.(2016)
BPC5_colamp_a 		0.872 0.872
BPC6
M06719_2.00 		Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM		 Dap-seq
OMalley et al.(2016)
BPC6_col_a 		0.766 0.766
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g149640.1 BBR 1 47

Links

Other BBR family TFs
Other Brassica oleracea TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZBTB4 Felis catus ENSFCAG00000029504 N
ENSGMOG00000007716 Gadus morhua ENSGMOG00000007716 N
ENSMICG00000000950 Microcebus murinus ENSMICG00000000950 N
ENSMODG00000006962 Monodelphis domestica ENSMODG00000006962 N
ENSONIG00000009228 Oreochromis niloticus ENSONIG00000009228 N
ENSPFOG00000008187 Poecilia formosa ENSPFOG00000008187 N
ENSTNIG00000001659 Tetraodon nigroviridis ENSTNIG00000001659 N
ENSXMAG00000015683 Xiphophorus maculatus ENSXMAG00000015683 N