CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

30170.m014145 *(Ricinus communis)* BBR
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF06217 (GAGA_bind)	IPR010409	30170.m014145	T024791_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
BPC6 M06719_2.00	Arabidopsis thaliana	KAGAGAGAGAGAGAGAGAGAG	CTCTCTCTCTCTCTCTCTCTM	Dap-seq OMalley et al.(2016) BPC6_col_a	0.751	0.751
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
30170.m014145	BBR	1	339	MDDGGHRENGRHKADQYKTAQGQWLMQAQPSMKQIMAIMAERDAAIHERNMAISEKKAAIAERDMAFLQRDSAIAERNNAIMERDNAIATLQYRENSIPSGNMPSSCPPGCQISRGVKHMHHPQQHAHHMPHSSEASYSTREMQTSDTLPMSPVGSEAAKPRRVKRSKDAKMAPSNKKTSKSPRKIKRESEDLNKVMFGKSHEWKNGQDMGGGADDLNKQLVVASKSDWKGHDLGLNQIAFDESTMPAPVCSCTGVFRQCYKWGNGGWQSSCCTTTLSMHPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGYDLSSPVDLKEHWAKHGTNRYITIK

Links
Other BBR family TFs
Other *Ricinus communis* TFs