Bra011540 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra011540 T031405_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.888 0.922
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.888 0.882
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.888 0.843
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.888 0.843
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.878 0.824
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.878 0.804
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.878 0.804
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.875 0.882
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.875 0.882
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.875 0.863
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.862 0.843
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.862 0.843
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.855 0.784
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra011540.1-P bHLH 176 226

Links

Other bHLH family TFs
Other Brassica rapa TFs

857 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA011179 Oryza indica BGIOSGA011179 N 0.000
Bostr.19427s0042 Boechera stricta Bostr.19427s0042 I 0.000
F775_01009 Aegilops tauschii F775_01009 N 0.000
F775_02805 Aegilops tauschii F775_02805 N 0.000
F775_04526 Aegilops tauschii F775_04526 N 0.000
LPERR03G08340 Leersia perrieri LPERR03G08340 N 0.000
MLOC_56065 Hordeum vulgare MLOC_56065 N 0.000
OB03G19470 Oryza brachyantha OB03G19470 N 0.000
OBART03G09330 Oryza barthii OBART03G09330 N 0.000
OGLUM03G09410 Oryza glumaepatula OGLUM03G09410 N 0.000
OMERI03G08710 Oryza meridionalis OMERI03G08710 N 0.000
ONIVA02G39270 Oryza nivara ONIVA02G39270 N 0.000
OPUNC03G08950 Oryza punctata OPUNC03G08950 N 0.000
OS03G0229100 Oryza sativa OS03G0229100 N 0.000
Pavir.Ha01098 Panicum virgatum Pavir.Ha01098 N 0.000
Pavir.Hb01590 Panicum virgatum Pavir.Hb01590 N 0.000
Traes_4BL_2F534B325 Triticum aestivum Traes_4BL_2F534B325 N 0.000
Traes_4DL_9477862E8 Triticum aestivum Traes_4DL_9477862E8 N 0.000
Traes_4DL_F822F371E Triticum aestivum Traes_4DL_F822F371E N 0.000