USF1 (Canis familiaris)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSCAFG00000012689 T033182_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.914 1.000
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.914 1.000
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.914 1.000
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.914 1.000
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.914 1.000
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.914 1.000
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.914 1.000
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.914 1.000
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.914 1.000
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.914 1.000
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.914 1.000
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.914 1.000
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.914 1.000
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.914 1.000
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.914 1.000
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000018688 bHLH 227 282

Links

Other bHLH family TFs
Other Canis familiaris TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA037277 Oryza indica BGIOSGA037277 N
BGIOSGA037293 Oryza indica BGIOSGA037293 N
BGIOSGA037294 Oryza indica BGIOSGA037294 N
LPERR12G08400 Leersia perrieri LPERR12G08400 N
OB0134G10010 Oryza brachyantha OB0134G10010 N
OB0325G10010 Oryza brachyantha OB0325G10010 N
OB12G18970 Oryza brachyantha OB12G18970 N
OBART12G09720 Oryza barthii OBART12G09720 N
OBART12G09840 Oryza barthii OBART12G09840 N
OBART12G09870 Oryza barthii OBART12G09870 N
OGLUM12G10910 Oryza glumaepatula OGLUM12G10910 N
OGLUM12G11050 Oryza glumaepatula OGLUM12G11050 N
OGLUM12G11100 Oryza glumaepatula OGLUM12G11100 N
OLONG_012845 Oryza longistaminata OLONG_012845 N
OLONG_017316 Oryza longistaminata OLONG_017316 N
OMERI12G11070 Oryza meridionalis OMERI12G11070 N
ONIVA01G27180 Oryza nivara ONIVA01G27180 N
ONIVA08G15060 Oryza nivara ONIVA08G15060 N
ONIVA12G09980 Oryza nivara ONIVA12G09980 N
OPUNC01G25690 Oryza punctata OPUNC01G25690 N
OPUNC12G08870 Oryza punctata OPUNC12G08870 N
ORGLA12G0092600 Oryza glaberrima ORGLA12G0092600 N
ORGLA12G0092700 Oryza glaberrima ORGLA12G0092700 N
ORUFI12G10750 Oryza rufipogon ORUFI12G10750 N
ORUFI12G10910 Oryza rufipogon ORUFI12G10910 N
ORUFI12G10940 Oryza rufipogon ORUFI12G10940 N